Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine synthase subunit purq | YT1_RS06705 | Not Available | Positive | 1218069 - 1218746 | 23594.0 |
| sensor histidine kinase | YT1_RS06710 | Not Available | Negative | 1218713 - 1219834 | 39620.2 |
| response regulator transcription factor | YT1_RS06715 | Not Available | Negative | 1219831 - 1220643 | 29198.1 |
| hypothetical protein | YT1_RS06720 | Not Available | Negative | 1220640 - 1220879 | 8817.7 |
| duf305 domain-containing protein | YT1_RS06725 | Not Available | Positive | 1221054 - 1221635 | 20866.5 |
| copper-translocating p-type atpase | YT1_RS06730 | Not Available | Positive | 1221743 - 1223812 | 71076.2 |
| hypothetical protein | YT1_RS06735 | Not Available | Positive | 1224160 - 1224525 | 12419.3 |
| voc family protein | YT1_RS06740 | Not Available | Positive | 1224586 - 1224936 | 12594.8 |
| atp-binding protein | YT1_RS06745 | Not Available | Negative | 1224983 - 1226080 | 39695.3 |
| m18 family aminopeptidase | YT1_RS06750 | Not Available | Positive | 1226201 - 1227499 | 45517.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


