Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maue/doxx family redox-associated membrane protein | YT1_RS06605 | Not Available | Positive | 1198568 - 1199158 | 19984.8 |
| redoxin domain-containing protein | YT1_RS06610 | Not Available | Positive | 1199200 - 1199814 | 21691.4 |
| methylamine dehydrogenase light chain | YT1_RS06615 | Not Available | Positive | 1199851 - 1200513 | 23736.8 |
| hypothetical protein | YT1_RS06620 | Not Available | Positive | 1200510 - 1201823 | 45528.3 |
| multicopper oxidase family protein | YT1_RS06625 | Not Available | Positive | 1201820 - 1203430 | 55876.0 |
| plastocyanin/azurin family copper-binding protein | YT1_RS06630 | Not Available | Positive | 1203442 - 1203786 | 12238.6 |
| cupredoxin domain-containing protein | YT1_RS06635 | Not Available | Positive | 1203783 - 1204115 | 11732.7 |
| hypothetical protein | YT1_RS06640 | Not Available | Positive | 1204161 - 1204997 | 27777.5 |
| glutathione peroxidase | YT1_RS06645 | Not Available | Positive | 1205067 - 1205561 | 17808.0 |
| 5,6-dimethylbenzimidazole synthase | YT1_RS06650 | Not Available | Positive | 1205567 - 1206220 | 24000.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


