Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | YT1_RS06555 | Not Available | Positive | 1188797 - 1189804 | 35391.6 |
| feccd family abc transporter permease | YT1_RS06560 | Not Available | Positive | 1189801 - 1190910 | 37032.1 |
| abc transporter atp-binding protein | YT1_RS06565 | Not Available | Positive | 1190907 - 1191689 | 27712.6 |
| (2fe-2s)-binding protein | YT1_RS06570 | Not Available | Positive | 1191682 - 1192446 | 26606.7 |
| duf1304 domain-containing protein | YT1_RS06575 | Not Available | Negative | 1192453 - 1192857 | 14091.5 |
| hypothetical protein | YT1_RS06580 | Not Available | Negative | 1192854 - 1193315 | 15741.7 |
| helix-turn-helix transcriptional regulator | YT1_RS06585 | Not Available | Positive | 1193403 - 1194470 | 37719.9 |
| serine hydrolase domain-containing protein | YT1_RS06590 | Not Available | Positive | 1194505 - 1195770 | 45067.0 |
| iclr family transcriptional regulator | YT1_RS06595 | Not Available | Negative | 1195910 - 1196671 | 26871.3 |
| apc family permease | YT1_RS06600 | Not Available | Negative | 1196668 - 1198131 | 49765.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


