Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siderophore-interacting protein | YT1_RS06455 | Not Available | Negative | 1164657 - 1165487 | 30365.8 |
| mdr family mfs transporter | YT1_RS06460 | Not Available | Negative | 1165517 - 1166953 | 48952.2 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | YT1_RS06465 | Not Available | Positive | 1167063 - 1167956 | 32888.8 |
| s9 family peptidase | YT1_RS06470 | Not Available | Positive | 1167953 - 1170094 | 79617.5 |
| response regulator | YT1_RS06475 | Not Available | Negative | 1170233 - 1170922 | 24225.1 |
| sensor histidine kinase | YT1_RS06480 | Not Available | Negative | 1170919 - 1172475 | 54760.5 |
| cation:dicarboxylate symporter family transporter | YT1_RS06485 | Not Available | Positive | 1172667 - 1174064 | 47863.4 |
| nucleoside hydrolase | YT1_RS06490 | Not Available | Negative | 1174164 - 1175207 | 36944.0 |
| lysr substrate-binding domain-containing protein | YT1_RS06495 | Not Available | Negative | 1175266 - 1176183 | 34084.4 |
| alkyl hydroperoxide reductase subunit f | YT1_RS06500 | Not Available | Negative | 1176194 - 1177786 | 56264.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


