Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | YT1_RS06400 | Not Available | Negative | 1152683 - 1153408 | 25256.1 |
| pucr family transcriptional regulator | YT1_RS06405 | Not Available | Negative | 1153405 - 1155231 | 64610.1 |
| llm class flavin-dependent oxidoreductase | YT1_RS06410 | Not Available | Negative | 1155325 - 1156239 | 32400.9 |
| hypothetical protein | YT1_RS06415 | Not Available | Negative | 1156452 - 1156967 | 19063.6 |
| phosphotransferase family protein | YT1_RS06420 | Not Available | Negative | 1156967 - 1158187 | 45643.1 |
| hypothetical protein | YT1_RS06425 | Not Available | Negative | 1158200 - 1159189 | 37368.7 |
| helix-turn-helix transcriptional regulator | YT1_RS06430 | Not Available | Negative | 1159236 - 1160372 | 40056.3 |
| is1634 family transposase | YT1_RS06435 | Not Available | Negative | 1160388 - 1161959 | 57609.8 |
| mfs transporter | YT1_RS06440 | Not Available | Negative | 1162066 - 1162416 | 12793.7 |
| is701 family transposase | YT1_RS06445 | Not Available | Positive | 1162781 - 1164001 | 45187.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


