Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| paai family thioesterase | YT1_RS06350 | Not Available | Negative | 1144348 - 1145160 | 28371.8 |
| sdr family oxidoreductase | YT1_RS06355 | Not Available | Negative | 1145260 - 1146156 | 31387.3 |
| acyl-coa dehydrogenase family protein | YT1_RS06360 | Not Available | Negative | 1146186 - 1147322 | 41213.3 |
| enoyl-coa hydratase-related protein | YT1_RS06365 | Not Available | Negative | 1147427 - 1148230 | 29050.4 |
| amp-binding protein | YT1_RS06370 | Not Available | Positive | 1148650 - 1149168 | 18433.0 |
| is110 family transposase | YT1_RS06375 | Not Available | Positive | 1149384 - 1150577 | 42541.7 |
| long-chain fatty acid--coa ligase | YT1_RS06380 | Not Available | Positive | 1150624 - 1151106 | 17709.3 |
| thioesterase family protein | YT1_RS06385 | Not Available | Negative | 1151075 - 1151608 | 19833.7 |
| tetr/acrr family transcriptional regulator | YT1_RS06390 | Not Available | Positive | 1151774 - 1152325 | 20752.7 |
| helix-turn-helix transcriptional regulator | YT1_RS06395 | Not Available | Negative | 1152419 - 1152674 | 9858.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


