Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| k(+)-transporting atpase subunit f | YT1_RS01390 | Not Available | Negative | 76624 - 76722 | 3358.27 |
| duf2254 domain-containing protein | YT1_RS01395 | Not Available | Positive | 77066 - 78364 | 46790.6 |
| hpf/raia family ribosome-associated protein | YT1_RS01400 | Not Available | Negative | 78434 - 78787 | 12942.2 |
| mmpl family transporter | YT1_RS01405 | Not Available | Negative | 78915 - 80987 | 72154.2 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS01410 | Not Available | Positive | 81062 - 81481 | 15516.4 |
| anti-sigma factor | YT1_RS01415 | Not Available | Negative | 81590 - 82333 | 25708.2 |
| sigma-70 family rna polymerase sigma factor | YT1_RS01420 | Not Available | Negative | 82323 - 82898 | 21209.9 |
| dienelactone hydrolase family protein | YT1_RS01425 | Not Available | Negative | 83064 - 83693 | 22636.2 |
| fasciclin domain-containing protein | YT1_RS01430 | Not Available | Positive | 83895 - 84518 | 20770.1 |
| lipocalin family protein | YT1_RS01435 | Not Available | Positive | 84542 - 85123 | 20561.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


