Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS06300 | Not Available | Negative | 1132826 - 1133839 | 36677.6 |
| mfs transporter | YT1_RS06305 | Not Available | Negative | 1133866 - 1135167 | 45968.1 |
| luxr c-terminal-related transcriptional regulator | YT1_RS06310 | Not Available | Positive | 1135730 - 1136803 | 38786.4 |
| helix-turn-helix domain-containing protein | YT1_RS06315 | Not Available | Positive | 1136953 - 1137948 | 36359.5 |
| amp-binding protein | YT1_RS06320 | Not Available | Negative | 1138086 - 1139753 | 60429.2 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS06325 | Not Available | Negative | 1140084 - 1140881 | 26977.4 |
| acyl-coa dehydrogenase family protein | YT1_RS06330 | Not Available | Negative | 1140909 - 1142063 | 41604.6 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS06335 | Not Available | Negative | 1142269 - 1142793 | 19463.3 |
| zinc-binding alcohol dehydrogenase family protein | YT1_RS06340 | Not Available | Negative | 1142901 - 1143881 | 34657.6 |
| whib family transcriptional regulator | YT1_RS06345 | Not Available | Negative | 1144029 - 1144301 | 10286.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


