Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| srpbcc family protein | YT1_RS06095 | Not Available | Positive | 1088388 - 1088819 | 15740.3 |
| arsr/smtb family transcription factor | YT1_RS06100 | Not Available | Positive | 1088816 - 1089142 | 11772.2 |
| alpha/beta hydrolase | YT1_RS06105 | Not Available | Positive | 1089293 - 1090858 | 54605.5 |
| gtp pyrophosphokinase family protein | YT1_RS06110 | Not Available | Positive | 1091115 - 1091747 | 24347.6 |
| aldehyde dehydrogenase | YT1_RS06120 | Not Available | Negative | 1092312 - 1093757 | 50567.7 |
| nad(p)-dependent alcohol dehydrogenase | YT1_RS06125 | Not Available | Negative | 1093794 - 1094900 | 37939.8 |
| nad(p)/fad-dependent oxidoreductase | YT1_RS06130 | Not Available | Negative | 1094961 - 1096190 | 43138.4 |
| cytochrome p450 | YT1_RS06135 | Not Available | Negative | 1096195 - 1097517 | 49828.2 |
| 2fe-2s iron-sulfur cluster-binding protein | YT1_RS06140 | Not Available | Positive | 1097869 - 1098189 | 10935.7 |
| helix-turn-helix transcriptional regulator | YT1_RS06145 | Not Available | Negative | 1098262 - 1099209 | 34143.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


