Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain is characterized by the presence of flagella, which may contribute to its motility and ability to adapt to various soil conditions. Notably, it possesses a single replicon, which is indicative of its genomic organization. The genomic information for this strain is cataloged under the accession number NZ_CP023714.1. Rhodococcus species, including R. ruber, are known for their metabolic versatility, allowing them to degrade a wide range of organic compounds. This adaptability makes them important in bioremediation processes, where they can break down pollutants in contaminated soils. The ability to thrive in diverse soil habitats suggests that R. ruber strain YC-YT1 may play a significant role in soil ecology, potentially influencing nutrient cycling and the degradation of organic materials. Overall, the traits of Rhodococcus ruber strain YC-YT1 highlight its ecological importance and potential applications in environmental microbiology, particularly in the context of soil health and bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 chromosome, complete genome.

Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2og-fe(ii) oxygenaseYT1_RS05995Not AvailableNegative1054562 - 105528426944.9
marr family winged helix-turn-helix transcriptional regulatorYT1_RS06000Not AvailableNegative1055433 - 105587016264.6
abc transporter atp-binding proteinYT1_RS06005Not AvailablePositive1055947 - 105778265785.7
isochorismatase family proteinYT1_RS06010Not AvailableNegative1057790 - 105844323933.4
(2,3-dihydroxybenzoyl)adenylate synthaseYT1_RS06015Not AvailableNegative1058472 - 106012158880.1
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenaseYT1_RS06020Not AvailableNegative1060137 - 106090726244.5
isochorismate synthase menfYT1_RS06025Not AvailableNegative1060904 - 106209441111.7
non-ribosomal peptide synthetaseYT1_RS06030Not AvailablePositive1062270 - 1070006274586.0
gnat family n-acetyltransferaseYT1_RS06035Not AvailableNegative1070259 - 107072317559.6
dihydrodipicolinate synthase family proteinYT1_RS06040Not AvailableNegative1070889 - 107177331932.3

Displaying genes 1021 – 1030 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.