Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | YT1_RS05945 | Not Available | Positive | 1045249 - 1045866 | 22201.8 |
| adenylosuccinate lyase | YT1_RS05950 | Not Available | Positive | 1045891 - 1047312 | 51361.9 |
| tetr/acrr family transcriptional regulator | YT1_RS05955 | Not Available | Positive | 1047425 - 1048003 | 21076.3 |
| hit family protein | YT1_RS05960 | Not Available | Positive | 1048000 - 1048437 | 15031.1 |
| hypothetical protein | YT1_RS05965 | Not Available | Negative | 1048455 - 1048640 | 6259.46 |
| serine hydrolase domain-containing protein | YT1_RS05970 | Not Available | Positive | 1048965 - 1050164 | 43480.8 |
| mfs transporter | YT1_RS05975 | Not Available | Negative | 1050234 - 1051520 | 46255.9 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS05980 | Not Available | Negative | 1051778 - 1052284 | 18235.1 |
| duf1254 domain-containing protein | YT1_RS05985 | Not Available | Positive | 1052813 - 1054246 | 52881.3 |
| ada metal-binding domain-containing protein | YT1_RS05990 | Not Available | Negative | 1054305 - 1054565 | 9408.21 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


