Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS05895 | Not Available | Negative | 1035473 - 1036327 | 28836.8 |
| hypothetical protein | YT1_RS05900 | Not Available | Negative | 1036392 - 1036601 | 7544.98 |
| ig-like domain-containing protein | YT1_RS05905 | Not Available | Negative | 1036740 - 1037924 | 39948.1 |
| response regulator transcription factor | YT1_RS05910 | Not Available | Positive | 1038083 - 1038790 | 25978.2 |
| sensor histidine kinase | YT1_RS05915 | Not Available | Positive | 1038787 - 1040196 | 49598.4 |
| alpha/beta fold hydrolase | YT1_RS05920 | Not Available | Positive | 1040250 - 1041350 | 38958.9 |
| hit family protein | YT1_RS05925 | Not Available | Negative | 1041312 - 1041737 | 15499.5 |
| nucleoside/nucleotide kinase family protein | YT1_RS05930 | Not Available | Positive | 1041791 - 1042486 | 25022.8 |
| phosphoribosylamine--glycine ligase | YT1_RS05935 | Not Available | Positive | 1042583 - 1043839 | 42498.0 |
| pyridoxal phosphate-dependent aminotransferase | YT1_RS05940 | Not Available | Positive | 1043986 - 1045164 | 42179.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


