Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amp-binding protein | YT1_RS05840 | Not Available | Positive | 1026048 - 1027772 | 61754.6 |
| lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family protein | YT1_RS05845 | Not Available | Positive | 1027917 - 1029308 | 50814.7 |
| mbth family protein | YT1_RS05850 | Not Available | Positive | 1029305 - 1029544 | 9201.53 |
| threonine/serine exporter thre family protein | YT1_RS05855 | Not Available | Negative | 1029572 - 1031035 | 50574.4 |
| Trna-thr | Not Available | Not Available | Positive | 1031165 - 1031239 | Not Available |
| hypothetical protein | YT1_RS05865 | Not Available | Negative | 1031326 - 1031559 | 8144.35 |
| winged helix-turn-helix transcriptional regulator | YT1_RS05870 | Not Available | Negative | 1031633 - 1032154 | 19720.4 |
| serine/threonine-protein kinase | YT1_RS05880 | Not Available | Negative | 1032599 - 1033945 | 45769.9 |
| hypothetical protein | YT1_RS05885 | Not Available | Negative | 1034076 - 1034540 | 16634.4 |
| nuclear transport factor 2 family protein | YT1_RS05890 | Not Available | Positive | 1034685 - 1035467 | 29035.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


