Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1

Gram-negativeCocci

Kingdom

Pseudomonadati

Phylum

Chlorobiota

Class

Chlorobiia

Order

Chlorobiales

Family

Chlorobiaceae

Genus

Prosthecochloris

Description

Prosthecochloris sp. GSB1, also referred to as strain TY Vent or GSB1/Ty-1, is a Gram-negative, cocci-shaped bacterium. This strain is characterized by the presence of flagella, enabling motility. Prosthecochloris sp. GSB1 has a single replicon, which is a defining feature of its genetic structure. The genomic information for this strain is accessible under the accession number NZ_CP022571.1. The classification of Prosthecochloris sp. GSB1 as a member of the Gram-negative group indicates that it possesses an outer membrane, a characteristic that often influences its interactions with the environment, including its susceptibility to antibiotics and its role in biogeochemical cycles. The cocci shape suggests a spherical morphology, which can affect the bacterium's surface-area-to-volume ratio, influencing nutrient uptake and metabolic efficiency. The presence of flagella indicates that Prosthecochloris sp. GSB1 is motile, which may facilitate its movement toward favorable environmental conditions or resources. This motility could be particularly advantageous in fluctuating environments where nutrient availability is variable. In summary, Prosthecochloris sp. GSB1's Gram-negative status, cocci shape, and motility through flagella contribute to its adaptability in diverse ecological niches. Understanding these traits can provide insights into its ecological roles, particularly in aquatic environments where it may participate in primary production or nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumChlorobiota
ClassChlorobiia
OrderChlorobiales
FamilyChlorobiaceae
GenusProsthecochloris
SpeciesProsthecochloris sp. GSB1
Strainstrain TY Vent = GSB1 = Ty-1

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1


Gene Summary

Adenine Count

544166 bp

Thymine Count

542608 bp

Guanine Count

692445 bp

Cytosine Count

689260 bp

Genome Length

2468479 bp

Protein-coding Genes

2297 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaCHL67_RS00005Not AvailablePositive1 - 148255882.7
dna polymerase iii subunit betaCHL67_RS00010Not AvailablePositive1793 - 291741157.1
dna replication/repair protein recfCHL67_RS00015Not AvailablePositive2934 - 404041731.3
duf721 domain-containing proteinCHL67_RS00020Not AvailablePositive4042 - 433511397.8
site-2 protease family proteinCHL67_RS12105Not AvailablePositive4493 - 47087946.88
fpra family a-type flavoproteinCHL67_RS00030Not AvailableNegative5227 - 645046065.1
dna polymerase domain-containing proteinCHL67_RS00035Not AvailableNegative6639 - 902691795.9
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgCHL67_RS00040Not AvailableNegative9102 - 1097368551.9
thiosulfate oxidation carrier protein soxyCHL67_RS00045Not AvailablePositive11326 - 1176315834.3
thiosulfate oxidation carrier complex protein soxzCHL67_RS00050Not AvailablePositive11783 - 1208510890.2

Displaying genes 1 – 10 of 2355 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001971heptanedioateC7H10O4Chemical structure of heptanedioateNot available
Average158.154Da
Monoisotopic158.059006Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm00030222-methyl-cis-aconitateC7H5O6Chemical structure of 2-methyl-cis-aconitateNot available
Average185.113Da
Monoisotopic185.0102586Da
BASm0003334aldehydo-D-ribose 5-phosphateC5H11O8PChemical structure of aldehydo-D-ribose 5-phosphateNot available
Average230.1098Da
Monoisotopic230.0191538Da
BASm00097983-hydroxybutane-1,2,3-tricarboxylateC7H7O7Chemical structure of 3-hydroxybutane-1,2,3-tricarboxylateNot available
Average203.128Da
Monoisotopic203.0208233Da
BASm0010884(7R,8S)-7,8-diammoniononanoateC9H21N2O2Chemical structure of (7R,8S)-7,8-diammoniononanoateNot available
Average189.278Da
Monoisotopic189.1597543Da
BASm0010887(4R,5S)-dethiobiotinC10H18N2O3Chemical structure of (4R,5S)-dethiobiotin533-48-2
Average214.2615Da
Monoisotopic214.1317425Da

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.