Pseudosulfitobacter pseudonitzschiae strain SMR1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pseudosulfitobacter

Description

Pseudosulfitobacter pseudonitzschiae strain SMR1 is characterized by having six replicons, indicating a complex genomic architecture. This strain is associated with the accession numbers NZ_CP022415.1, NZ_CP022416.1, NZ_CP022418.1, NZ_CP022419.1, NZ_CP022420.1, and NZ_CP022422.1, which provide a basis for its genomic analysis and taxonomic classification. The presence of multiple replicons in P. pseudonitzschiae strain SMR1 suggests a potential for genetic diversity and adaptability. This trait may enable the organism to thrive in varying environmental conditions, which is particularly relevant given its ecological context. The strain is likely to inhabit marine environments due to its classification within the Pseudosulfitobacter genus, which is typically found in such habitats. The genetic structure of P. pseudonitzschiae strain SMR1, as indicated by its six replicons, could play a role in its metabolic capabilities, including its interactions with other microorganisms in the marine ecosystem. Understanding the genomic features of this strain may provide insights into its ecological functions, such as nutrient cycling and its potential contributions to the marine microbiome. Overall, the genomic complexity of Pseudosulfitobacter pseudonitzschiae strain SMR1 highlights its potential ecological significance, particularly in marine environments where diverse microbial communities exist. The strain's adaptation mechanisms, reflected in its multiple replicons, may influence its interactions within these communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPseudosulfitobacter
SpeciesPseudosulfitobacter pseudonitzschiae
Strainstrain SMR1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudosulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3,

Gene Summary

Adenine Count

59130 bp

Thymine Count

59232 bp

Guanine Count

83673 bp

Cytosine Count

82742 bp

Genome Length

284777 bp

Protein-coding Genes

281 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sarcosine oxidase subunit deltaSULPSESMR1_RS21215Not AvailablePositive72657 - 7291710134.9
2fe-2s iron-sulfur cluster-binding proteinSULPSESMR1_RS21220Not AvailablePositive72910 - 75771102051.0
hypothetical proteinSULPSESMR1_RS25110Not AvailablePositive75773 - 7635420678.7
prolyl oligopeptidase family serine peptidaseSULPSESMR1_RS21230Not AvailablePositive77292 - 7826334577.5
glxa family transcriptional regulatorSULPSESMR1_RS21235Not AvailableNegative78269 - 7929738020.2
trap transporter substrate-binding protein dctpSULPSESMR1_RS21240Not AvailablePositive79593 - 8060037607.1
trap transporter small permeaseSULPSESMR1_RS21245Not AvailablePositive80835 - 8135018975.8
trap transporter large permeaseSULPSESMR1_RS21250Not AvailablePositive81357 - 8265545629.0
dihydrodipicolinate synthase family proteinSULPSESMR1_RS21255Not AvailablePositive82751 - 8366833665.6
aldehyde dehydrogenaseSULPSESMR1_RS21260Not AvailablePositive83672 - 8518053930.1

Displaying genes 71 – 80 of 4675 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.