Pseudosulfitobacter pseudonitzschiae strain SMR1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pseudosulfitobacter

Description

Pseudosulfitobacter pseudonitzschiae strain SMR1 is characterized by having six replicons, indicating a complex genomic architecture. This strain is associated with the accession numbers NZ_CP022415.1, NZ_CP022416.1, NZ_CP022418.1, NZ_CP022419.1, NZ_CP022420.1, and NZ_CP022422.1, which provide a basis for its genomic analysis and taxonomic classification. The presence of multiple replicons in P. pseudonitzschiae strain SMR1 suggests a potential for genetic diversity and adaptability. This trait may enable the organism to thrive in varying environmental conditions, which is particularly relevant given its ecological context. The strain is likely to inhabit marine environments due to its classification within the Pseudosulfitobacter genus, which is typically found in such habitats. The genetic structure of P. pseudonitzschiae strain SMR1, as indicated by its six replicons, could play a role in its metabolic capabilities, including its interactions with other microorganisms in the marine ecosystem. Understanding the genomic features of this strain may provide insights into its ecological functions, such as nutrient cycling and its potential contributions to the marine microbiome. Overall, the genomic complexity of Pseudosulfitobacter pseudonitzschiae strain SMR1 highlights its potential ecological significance, particularly in marine environments where diverse microbial communities exist. The strain's adaptation mechanisms, reflected in its multiple replicons, may influence its interactions within these communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPseudosulfitobacter
SpeciesPseudosulfitobacter pseudonitzschiae
Strainstrain SMR1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudosulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3,

Gene Summary

Adenine Count

59130 bp

Thymine Count

59232 bp

Guanine Count

83673 bp

Cytosine Count

82742 bp

Genome Length

284777 bp

Protein-coding Genes

281 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidaseSULPSESMR1_RS16695Not AvailableNegative3399399 - 340013627162.6
transglutaminase domain-containing proteinSULPSESMR1_RS16700Not AvailableNegative3400171 - 340096828828.3
alpha-e domain-containing proteinSULPSESMR1_RS16705Not AvailableNegative3400989 - 340193035457.3
circularly permuted type 2 atp-grasp proteinSULPSESMR1_RS16710Not AvailableNegative3401932 - 340335652484.4
nad(p)/fad-dependent oxidoreductaseSULPSESMR1_RS16715Not AvailablePositive3403681 - 340489544354.4
nad-dependent epimerase/dehydratase family proteinSULPSESMR1_RS16720Not AvailablePositive3404908 - 340574430229.7
protocatechuate 3,4-dioxygenase subunit alphaSULPSESMR1_RS16725Not AvailableNegative3405788 - 340639321813.7
protocatechuate 3,4-dioxygenase subunit betaSULPSESMR1_RS16730Not AvailableNegative3406393 - 340712427248.5
4-carboxymuconolactone decarboxylaseSULPSESMR1_RS16735Not AvailableNegative3407121 - 340750113772.3
4-hydroxybenzoate 3-monooxygenaseSULPSESMR1_RS16740Not AvailableNegative3407513 - 340868243754.7

Displaying genes 4311 – 4320 of 4675 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.