Pseudosulfitobacter pseudonitzschiae strain SMR1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Pseudosulfitobacter

Description

Pseudosulfitobacter pseudonitzschiae strain SMR1 is characterized by having six replicons, indicating a complex genomic architecture. This strain is associated with the accession numbers NZ_CP022415.1, NZ_CP022416.1, NZ_CP022418.1, NZ_CP022419.1, NZ_CP022420.1, and NZ_CP022422.1, which provide a basis for its genomic analysis and taxonomic classification. The presence of multiple replicons in P. pseudonitzschiae strain SMR1 suggests a potential for genetic diversity and adaptability. This trait may enable the organism to thrive in varying environmental conditions, which is particularly relevant given its ecological context. The strain is likely to inhabit marine environments due to its classification within the Pseudosulfitobacter genus, which is typically found in such habitats. The genetic structure of P. pseudonitzschiae strain SMR1, as indicated by its six replicons, could play a role in its metabolic capabilities, including its interactions with other microorganisms in the marine ecosystem. Understanding the genomic features of this strain may provide insights into its ecological functions, such as nutrient cycling and its potential contributions to the marine microbiome. Overall, the genomic complexity of Pseudosulfitobacter pseudonitzschiae strain SMR1 highlights its potential ecological significance, particularly in marine environments where diverse microbial communities exist. The strain's adaptation mechanisms, reflected in its multiple replicons, may influence its interactions within these communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPseudosulfitobacter
SpeciesPseudosulfitobacter pseudonitzschiae
Strainstrain SMR1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudosulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3,

Gene Summary

Adenine Count

59130 bp

Thymine Count

59232 bp

Guanine Count

83673 bp

Cytosine Count

82742 bp

Genome Length

284777 bp

Protein-coding Genes

281 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trbg/virb9 family p-type conjugative transfer proteinSULPSESMR1_RS21520Not AvailablePositive133200 - 13405131660.4
type iv secretion system protein virb10SULPSESMR1_RS21525Not AvailablePositive134051 - 13519339911.0
p-type dna transfer atpase virb11SULPSESMR1_RS21530Not AvailablePositive135200 - 13622838432.2
type iv secretory system conjugative dna transfer family proteinSULPSESMR1_RS21535Not AvailablePositive136375 - 13835772163.8
lpd7 domain-containing proteinSULPSESMR1_RS21540Not AvailablePositive138372 - 14017166585.4
hypothetical proteinSULPSESMR1_RS25620Not AvailableNegative140280 - 1405349696.49
is1182 family transposaseSULPSESMR1_RS21545Not AvailablePositive140418 - 14177051290.0
is110 family transposaseSULPSESMR1_RS21550Not AvailableNegative142132 - 14317238276.7
helix-turn-helix transcriptional regulatorSULPSESMR1_RS21555Not AvailableNegative143435 - 14434932797.4
abc transporter permeaseSULPSESMR1_RS21560Not AvailablePositive144441 - 14513623634.7

Displaying genes 131 – 140 of 4675 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.