Citrobacter braakii strain SCC4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain SCC4 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella. This motility feature may enhance its ability to navigate various environments, potentially impacting its ecological interactions. The strain contains two replicons, indicating a complex genomic structure that may contribute to its adaptability. Citrobacter braakii has been identified in diverse hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of tree frog), and Oophaga histrionica (a species of poison dart frog). This broad host range suggests that C. braakii may play various roles in different ecosystems, possibly including pathogenic, symbiotic, or commensal interactions. The strain is cataloged under the accessions NZ_CP021078.1 and MTCP00000000.1, which provide valuable genomic information for further research. Understanding the genetic makeup and ecological roles of Citrobacter braakii strain SCC4 can provide insights into its interactions with both aquatic and terrestrial hosts, as well as its potential implications in health and disease contexts. This knowledge may be important for microbiological studies and environmental monitoring, particularly in relation to its presence in diverse animal species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain SCC4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain SCC4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain SCC4 plasmid pSCC4, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

57 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-ribulose-5-phosphate 4-epimeraseBWD41_11395Not AvailableNegative2325621 - 232631625588.4
l-arabinose isomeraseBWD41_11400Not AvailableNegative2326374 - 232787656007.0
ribulokinaseBWD41_11405Not AvailableNegative2327887 - 232959662081.8
arabinose operon regulatory proteinBWD41_11410Not AvailablePositive2329936 - 233078132124.2
deda family proteinBWD41_11415Not AvailablePositive2330901 - 233166828413.1
thiamine abc transporter atp-binding proteinBWD41_11420Not AvailableNegative2331718 - 233241925398.1
thiamine/thiamine pyrophosphate abc transporter permease thipBWD41_11425Not AvailableNegative2332403 - 233401359677.9
thiamine transporter substrate binding subunitBWD41_11430Not AvailableNegative2333989 - 233497236270.4
transcriptional regulator sgrrBWD41_11435Not AvailableNegative2335273 - 233692864097.9
inhibitor of glucose transporterBWD41_11440Not AvailablePositive2337028 - 23371504852.96

Displaying genes 2411 – 2420 of 5405 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.