Citrobacter braakii strain SCC4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain SCC4 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella. This motility feature may enhance its ability to navigate various environments, potentially impacting its ecological interactions. The strain contains two replicons, indicating a complex genomic structure that may contribute to its adaptability. Citrobacter braakii has been identified in diverse hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of tree frog), and Oophaga histrionica (a species of poison dart frog). This broad host range suggests that C. braakii may play various roles in different ecosystems, possibly including pathogenic, symbiotic, or commensal interactions. The strain is cataloged under the accessions NZ_CP021078.1 and MTCP00000000.1, which provide valuable genomic information for further research. Understanding the genetic makeup and ecological roles of Citrobacter braakii strain SCC4 can provide insights into its interactions with both aquatic and terrestrial hosts, as well as its potential implications in health and disease contexts. This knowledge may be important for microbiological studies and environmental monitoring, particularly in relation to its presence in diverse animal species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain SCC4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain SCC4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain SCC4 plasmid pSCC4, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

57 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbamoyl phosphate synthase large subunitBWD41_11235Not AvailablePositive2290550 - 2293777118141.0
caif/grla family transcriptional regulatorBWD41_11240Not AvailablePositive2294050 - 229444515427.1
phenylacetic acid degradation protein paayBWD41_11245Not AvailableNegative2294488 - 229508421475.0
carnitinyl-coa dehydrataseBWD41_11250Not AvailableNegative2295145 - 229593028097.6
crotonobetaine/carnitine-coa ligaseBWD41_11255Not AvailableNegative2295985 - 229753858329.9
l-carnitine coa-transferaseBWD41_11260Not AvailableNegative2297601 - 229881844924.1
crotonobetainyl-coa--carnitine coa-transferaseBWD41_11265Not AvailableNegative2298924 - 230006642485.7
l-carnitine:gamma-butyrobetaine antiporterBWD41_11270Not AvailableNegative2300101 - 230161856545.4
electron transfer flavoproteinBWD41_11280Not AvailablePositive2302100 - 230287027169.4
nitrogen fixation protein fixbBWD41_11285Not AvailablePositive2302886 - 230382733229.8

Displaying genes 2381 – 2390 of 5405 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.