Shewanella khirikhana strain TH2012

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella khirikhana strain TH2012 is a notable member of the Shewanella genus, characterized by the presence of flagella, which suggests a capacity for motility in aquatic environments. This trait may enhance its ability to navigate through diverse habitats, facilitating interactions with other microorganisms and substrates. The strain is distinguished by possessing two replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The genomic sequences associated with this strain can be accessed through the following accession numbers: NZ_CP020373.1 and NZ_CP020374.1, which provide a resource for further genomic analysis and research. Ecologically, Shewanella species are known for their role in biogeochemical cycling, particularly in the reduction of metals and the degradation of organic matter in anaerobic conditions. The motility conferred by flagella may play a critical role in the organism's ability to locate and utilize various electron acceptors, thereby influencing the microbial dynamics within its environment. Understanding the traits of Shewanella khirikhana strain TH2012 contributes to a broader comprehension of microbial ecology, particularly in sediments and other environments where these bacteria are prevalent.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella khirikhana
Strainstrain TH2012

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella khirikhana strain TH2012 chromosome, complete genome.

Gene Summary

Adenine Count

1086109 bp

Thymine Count

1083706 bp

Guanine Count

1321867 bp

Cytosine Count

1316947 bp

Genome Length

4808629 bp

Protein-coding Genes

4048 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidinol-phosphate transaminaseSTH12_RS08140Not AvailablePositive1876470 - 187755838209.9
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisbSTH12_RS08145Not AvailablePositive1877578 - 187864538993.6
imidazole glycerol phosphate synthase subunit hishSTH12_RS08150Not AvailablePositive1878705 - 187944525899.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseSTH12_RS08155Not AvailablePositive1879442 - 188017925717.8
imidazole glycerol phosphate synthase subunit hisfSTH12_RS08160Not AvailablePositive1880161 - 188094028154.6
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieSTH12_RS08165Not AvailablePositive1880947 - 188157322535.7
sensor domain-containing diguanylate cyclaseSTH12_RS08170Not AvailableNegative1881677 - 188266037203.2
lauroyl-kdo(2)-lipid iv(a) myristoyltransferaseSTH12_RS08175Not AvailableNegative1882716 - 188364234835.7
integration host factor subunit alphaSTH12_RS08180Not AvailableNegative1883727 - 188402311079.3
phenylalanine--trna ligase subunit betaSTH12_RS08185Not AvailableNegative1884027 - 188641486318.6

Displaying genes 1631 – 1640 of 4286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00074613-deoxy-alpha-D-manno-oct-2-ulosonateC8H13O8Chemical structure of 3-deoxy-alpha-D-manno-oct-2-ulosonateNot available
Average237.185Da
Monoisotopic237.061591Da
BASm0008097N-acetyltyramineC10H13NO2Chemical structure of N-acetyltyramineNot available
Average179.219Da
Monoisotopic179.0946287Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.