Shewanella khirikhana strain TH2012

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella khirikhana strain TH2012 is a notable member of the Shewanella genus, characterized by the presence of flagella, which suggests a capacity for motility in aquatic environments. This trait may enhance its ability to navigate through diverse habitats, facilitating interactions with other microorganisms and substrates. The strain is distinguished by possessing two replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The genomic sequences associated with this strain can be accessed through the following accession numbers: NZ_CP020373.1 and NZ_CP020374.1, which provide a resource for further genomic analysis and research. Ecologically, Shewanella species are known for their role in biogeochemical cycling, particularly in the reduction of metals and the degradation of organic matter in anaerobic conditions. The motility conferred by flagella may play a critical role in the organism's ability to locate and utilize various electron acceptors, thereby influencing the microbial dynamics within its environment. Understanding the traits of Shewanella khirikhana strain TH2012 contributes to a broader comprehension of microbial ecology, particularly in sediments and other environments where these bacteria are prevalent.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella khirikhana
Strainstrain TH2012

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella khirikhana strain TH2012


Gene Summary

Adenine Count

13819 bp

Thymine Count

12324 bp

Guanine Count

11375 bp

Cytosine Count

12851 bp

Genome Length

50369 bp

Protein-coding Genes

59 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative ci repressorSTH12_RS21540Not AvailableNegative1144234 - 114500728927.2
Dna binding protein nerSTH12_RS04865Not AvailablePositive1145174 - 11453958010.58
TransposaseSTH12_RS04870Not AvailablePositive1145407 - 114706262083.7
Phage tail tape measure proteinSTH12_RS04875Not AvailableNegative1147295 - 114904661936.9
Putative major capsid proteinSTH12_RS04880Not AvailableNegative1149096 - 114999833513.4
I proteinSTH12_RS04885Not AvailableNegative1150001 - 115081630106.7
hypothetical proteinSTH12_RS04890Not AvailableNegative1150928 - 115129913336.8
Hypothetical proteinSTH12_RS04895Not AvailableNegative1151300 - 115168314378.4
hypothetical proteinSTH12_RS04900Not AvailableNegative1151696 - 115215417149.1
hypothetical proteinSTH12_RS04905Not AvailableNegative1152299 - 115262512276.0

Displaying genes 1 – 10 of 4286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.