Shewanella khirikhana strain TH2012

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella khirikhana strain TH2012 is a notable member of the Shewanella genus, characterized by the presence of flagella, which suggests a capacity for motility in aquatic environments. This trait may enhance its ability to navigate through diverse habitats, facilitating interactions with other microorganisms and substrates. The strain is distinguished by possessing two replicons, indicating a complex genetic structure that may contribute to its adaptability and metabolic versatility. The genomic sequences associated with this strain can be accessed through the following accession numbers: NZ_CP020373.1 and NZ_CP020374.1, which provide a resource for further genomic analysis and research. Ecologically, Shewanella species are known for their role in biogeochemical cycling, particularly in the reduction of metals and the degradation of organic matter in anaerobic conditions. The motility conferred by flagella may play a critical role in the organism's ability to locate and utilize various electron acceptors, thereby influencing the microbial dynamics within its environment. Understanding the traits of Shewanella khirikhana strain TH2012 contributes to a broader comprehension of microbial ecology, particularly in sediments and other environments where these bacteria are prevalent.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella khirikhana
Strainstrain TH2012

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella khirikhana strain TH2012 chromosome, complete genome.

Gene Summary

Adenine Count

1086109 bp

Thymine Count

1083706 bp

Guanine Count

1321867 bp

Cytosine Count

1316947 bp

Genome Length

4808629 bp

Protein-coding Genes

4048 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class i ribonucleotide reductase maintenance protein yfaeSTH12_RS06980Not AvailableNegative1612589 - 161294812828.7
class ia ribonucleoside-diphosphate reductase subunit betaSTH12_RS06985Not AvailableNegative1612917 - 161404743491.7
class 1a ribonucleoside-diphosphate reductase subunit alphaSTH12_RS06990Not AvailableNegative1614119 - 161640785634.2
had family hydrolaseSTH12_RS06995Not AvailableNegative1616921 - 161760123745.6
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigSTH12_RS07000Not AvailableNegative1617624 - 161833726403.8
dna topoisomerase (atp-hydrolyzing) subunit aSTH12_RS07005Not AvailablePositive1618800 - 162150599314.2
3-phosphoserine/phosphohydroxythreonine transaminaseSTH12_RS07010Not AvailablePositive1621617 - 162270839763.7
hypothetical proteinSTH12_RS07015Not AvailablePositive1622720 - 162307312941.9
amino acid aminotransferaseSTH12_RS07020Not AvailableNegative1623156 - 162434642940.5
3-phosphoshikimate 1-carboxyvinyltransferaseSTH12_RS07025Not AvailablePositive1624817 - 162609745513.7

Displaying genes 1401 – 1410 of 4286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00074613-deoxy-alpha-D-manno-oct-2-ulosonateC8H13O8Chemical structure of 3-deoxy-alpha-D-manno-oct-2-ulosonateNot available
Average237.185Da
Monoisotopic237.061591Da
BASm0008097N-acetyltyramineC10H13NO2Chemical structure of N-acetyltyramineNot available
Average179.219Da
Monoisotopic179.0946287Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.