Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio scophthalmi |
| Strain | strain VS-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Vibrio scophthalmi strain VS-12 chromosome 2, complete sequence.
Gene Summary
Adenine Count
408996 bp
Thymine Count
410436 bp
Guanine Count
321711 bp
Cytosine Count
322367 bp
Genome Length
1463510 bp
Protein-coding Genes
1302 genes
Non-Coding Genes
21 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter permease subunit | VSVS12_RS18685 | Q8FWV9 | Positive | 871185 - 874337 | 113456.0 |
| mate family efflux transporter | VSVS12_RS18690 | O07940 | Negative | 874390 - 875781 | 50477.8 |
| arac family transcriptional regulator | VSVS12_RS18695 | Not Available | Positive | 875877 - 876728 | 32869.6 |
| hopj type iii effector protein | VSVS12_RS18700 | Not Available | Positive | 876807 - 877145 | 12473.5 |
| multidrug efflux mfs transporter emrd | VSVS12_RS18705 | P31442 | Negative | 877252 - 878457 | 42094.7 |
| cysteine-rich cwc family protein | VSVS12_RS18710 | Not Available | Negative | 878646 - 878954 | 11418.6 |
| marr family winged helix-turn-helix transcriptional regulator | VSVS12_RS18715 | Not Available | Negative | 879059 - 879535 | 18115.1 |
| bcct family transporter | VSVS12_RS18720 | Q87NG3 | Positive | 879874 - 881445 | 56718.1 |
| 3'-5' exonuclease | VSVS12_RS18725 | A5IJJ8 | Negative | 881584 - 882303 | 27594.1 |
| putative nucleotidyltransferase substrate binding domain-containing protein | VSVS12_RS18730 | Not Available | Negative | 882311 - 884200 | 71251.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.



