Vibrio scophthalmi strain VS-12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-12 is characterized by having five distinct replicons, which are essential for its genomic organization and replication processes. This strain has been assigned several accessions that provide a framework for its genetic and genomic data, specifically NZ_CP016307.1, NZ_CP016308.1, NZ_CP016309.1, NZ_CP016310.1, and NZ_CP016311.1. The presence of multiple replicons in Vibrio scophthalmi strain VS-12 suggests a complex genetic architecture that may contribute to its adaptability in various environments. This trait can be significant for understanding its ecological roles, particularly in aquatic ecosystems where Vibrio species are commonly found. The adaptability conferred by multiple replicons could enhance the strain's survival and competitive ability in fluctuating environmental conditions, such as changes in salinity or nutrient availability. Overall, the genomic structure of Vibrio scophthalmi strain VS-12, as indicated by its multiple replicons and specific accessions, provides insight into its potential ecological strategies and interactions within its habitat. Further research could explore how these genetic traits influence its behavior and role in marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-12


Gene Summary

Adenine Count

896473 bp

Thymine Count

900258 bp

Guanine Count

732225 bp

Cytosine Count

737609 bp

Genome Length

3266565 bp

Protein-coding Genes

2826 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinVSVS12_RS15880Not AvailableNegative226927 - 22854060705.6
duf3486 family proteinVSVS12_RS15885Not AvailableNegative228509 - 22905120143.3
hypothetical proteinVSVS12_RS15890Not AvailablePositive229184 - 22984624563.2
hypothetical proteinVSVS12_RS23245Not AvailablePositive229843 - 23043322178.6
phage tail proteinVSVS12_RS15900Not AvailablePositive230426 - 23083015096.9
tail protein xVSVS12_RS15905Not AvailablePositive230827 - 2310518421.35
Tail proteinVSVS12_RS15910Not AvailablePositive231039 - 23203136322.2
Baseplate j-like proteinVSVS12_RS15915Not AvailablePositive232028 - 23315841802.5
hypothetical proteinVSVS12_RS15920Not AvailablePositive233162 - 23349712201.4
hypothetical proteinVSVS12_RS15925Not AvailablePositive233494 - 2337097889.97

Displaying genes 1 – 10 of 4512 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

187 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 187 metabolites

Health Effects

No health effects information available for this bacterium.