Vibrio scophthalmi strain VS-12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-12 is characterized by having five distinct replicons, which are essential for its genomic organization and replication processes. This strain has been assigned several accessions that provide a framework for its genetic and genomic data, specifically NZ_CP016307.1, NZ_CP016308.1, NZ_CP016309.1, NZ_CP016310.1, and NZ_CP016311.1. The presence of multiple replicons in Vibrio scophthalmi strain VS-12 suggests a complex genetic architecture that may contribute to its adaptability in various environments. This trait can be significant for understanding its ecological roles, particularly in aquatic ecosystems where Vibrio species are commonly found. The adaptability conferred by multiple replicons could enhance the strain's survival and competitive ability in fluctuating environmental conditions, such as changes in salinity or nutrient availability. Overall, the genomic structure of Vibrio scophthalmi strain VS-12, as indicated by its multiple replicons and specific accessions, provides insight into its potential ecological strategies and interactions within its habitat. Further research could explore how these genetic traits influence its behavior and role in marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-12
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-12 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408996 bp

Thymine Count

410436 bp

Guanine Count

321711 bp

Cytosine Count

322367 bp

Genome Length

1463510 bp

Protein-coding Genes

1302 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is3 family transposaseVSVS12_RS04280Not AvailablePositive918341 - 91951245495.2
duf3461 family proteinVSVS12_RS04285Q87MD5Negative919572 - 91995514774.1
bifunctional uridylyltransferase/uridylyl-removing protein glndVSVS12_RS04290A7N1X9Negative920100 - 922724100657.0
type i methionyl aminopeptidaseVSVS12_RS04295P0AE20Negative922814 - 92369232250.5
30s ribosomal protein s2VSVS12_RS04300A7N1X7Positive924084 - 92481226838.4
translation elongation factor tsVSVS12_RS04305A7N1X6Positive924936 - 92578129804.9
ump kinaseVSVS12_RS04310Q87ME0Positive925934 - 92666526222.9
ribosome recycling factorVSVS12_RS04315A7MXZ7Positive926775 - 92733220569.9
polyprenyl diphosphate synthaseVSVS12_RS04320Q9KPV6Positive927426 - 92818128210.1
phosphatidate cytidylyltransferaseVSVS12_RS04325P44937Positive928192 - 92903430559.1

Displaying genes 2341 – 2350 of 4512 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

41 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001603(Z)-1,2-dichloroetheneC2H2Cl2Chemical structure of (Z)-1,2-dichloroetheneNot available
Average96.943Da
Monoisotopic95.953355478Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00021245-dehydro-4-deoxy-D-glucarateC6H6O7Chemical structure of 5-dehydro-4-deoxy-D-glucarateNot available
Average190.1076Da
Monoisotopic190.0113525Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm0002655octadecanoyl-CoAC39H66N7O17P3SChemical structure of octadecanoyl-CoANot available
Average1029.97Da
Monoisotopic1029.347070181Da

Displaying 1–10 of 41 metabolites

Health Effects

No health effects information available for this bacterium.