Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio scophthalmi |
| Strain | strain VS-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Vibrio scophthalmi strain VS-12 chromosome 2, complete sequence.
Gene Summary
Adenine Count
408996 bp
Thymine Count
410436 bp
Guanine Count
321711 bp
Cytosine Count
322367 bp
Genome Length
1463510 bp
Protein-coding Genes
1302 genes
Non-Coding Genes
21 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine transaminase | VSVS12_RS01715 | Q58466 | Positive | 364177 - 365340 | 42911.5 |
| n-acetyl sugar amidotransferase | VSVS12_RS01720 | Not Available | Positive | 365352 - 366512 | 44525.6 |
| imidazole glycerol phosphate synthase subunit hish | VSVS12_RS01725 | Q2RGW0 | Positive | 366515 - 367129 | 22178.4 |
| imidazole glycerol phosphate synthase subunit hisf | VSVS12_RS01730 | Q3SEU8 | Positive | 367131 - 367886 | 27477.0 |
| pseudaminic acid cytidylyltransferase | VSVS12_RS01735 | Q0P8U6 | Positive | 367890 - 368579 | 25812.7 |
| udp-2,4-diacetamido-2,4, 6-trideoxy-beta-l-altropyranose hydrolase | VSVS12_RS23560 | Not Available | Positive | 368583 - 369188 | 22648.3 |
| bifunctional udp-2,4-diacetamido-2,4,6-trideoxy-beta-l-altropyranose hydrolase/gnat family n-acetyltransferase | VSVS12_RS23565 | Not Available | Positive | 369185 - 370084 | 34011.7 |
| pseudaminic acid synthase | VSVS12_RS01745 | Q939J8 | Positive | 370092 - 371144 | 38717.1 |
| glycosyltransferase 52 family protein | VSVS12_RS01750 | Not Available | Negative | 371246 - 372256 | 39015.2 |
| lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase | VSVS12_RS01755 | P44806 | Negative | 372290 - 373588 | 47707.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.



