Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio scophthalmi |
| Strain | strain VS-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Vibrio scophthalmi strain VS-12 chromosome 2, complete sequence.
Gene Summary
Adenine Count
408996 bp
Thymine Count
410436 bp
Guanine Count
321711 bp
Cytosine Count
322367 bp
Genome Length
1463510 bp
Protein-coding Genes
1302 genes
Non-Coding Genes
21 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | VSVS12_RS01260 | Q87KD3 | Negative | 270440 - 271720 | 47669.9 |
| methionyl-trna formyltransferase | VSVS12_RS01265 | A7N122 | Negative | 271860 - 272807 | 33998.7 |
| peptide deformylase | VSVS12_RS01270 | Q87KD5 | Negative | 272826 - 273335 | 19035.0 |
| peptidoglycan-binding protein lysm | VSVS12_RS01275 | Not Available | Positive | 273506 - 274441 | 34545.4 |
| dna-processing protein dpra | VSVS12_RS01280 | P43862 | Positive | 274445 - 275587 | 41245.2 |
| duf494 family protein | VSVS12_RS01285 | A7N118 | Positive | 275584 - 276060 | 18370.0 |
| type i dna topoisomerase | VSVS12_RS01290 | Not Available | Positive | 276182 - 276760 | 21775.2 |
| uracil-dna glycosylase family protein | VSVS12_RS01295 | Q87KE0 | Negative | 276815 - 277956 | 41895.9 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | VSVS12_RS01300 | Q87KE1 | Negative | 277960 - 278445 | 16529.2 |
| l-threonylcarbamoyladenylate synthase | VSVS12_RS01305 | Q87KE2 | Positive | 278641 - 279198 | 20288.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.



