Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Pseudoalteromonadaceae
Genus
Pseudoalteromonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Pseudoalteromonadaceae |
| Genus | Pseudoalteromonas |
| Species | Pseudoalteromonas rubra |
| Strain | strain SCSIO 6842 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Marine; marine sponge |
| Biotic relationship | Not Available |
| Host(s) | Mycale grandis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudoalteromonas rubra strain SCSIO 6842 chromosome 1, complete
Gene Summary
Adenine Count
1186942 bp
Thymine Count
1177319 bp
Guanine Count
1087505 bp
Cytosine Count
1081123 bp
Genome Length
4532889 bp
Protein-coding Genes
3763 genes
Non-Coding Genes
183 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3192 domain-containing protein | AT705_RS21850 | Not Available | Negative | 634286 - 634672 | 14610.7 |
| flap endonuclease xni | AT705_RS21855 | Q3ICC5 | Negative | 634730 - 635509 | 29340.3 |
| nucleotide 5'-monophosphate nucleosidase ppnn | AT705_RS21860 | P0ADS0 | Negative | 635579 - 636922 | 50071.6 |
| ggdef domain-containing protein | AT705_RS21865 | A0A0H2ZJS2 | Negative | 636937 - 638469 | 57594.7 |
| m61 family metallopeptidase | AT705_RS21870 | Not Available | Positive | 638653 - 640428 | 67152.4 |
| ykva family protein | AT705_RS21875 | Not Available | Negative | 640491 - 641042 | 21107.2 |
| hypothetical protein | AT705_RS21880 | Not Available | Negative | 641255 - 641809 | 20311.2 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | AT705_RS21885 | Q8ZFY1 | Negative | 641846 - 642457 | 22548.9 |
| imidazole glycerol phosphate synthase subunit hisf | AT705_RS21890 | Q3ICD4 | Negative | 642454 - 643227 | 28311.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | AT705_RS21895 | Q3ICF4 | Negative | 643209 - 643943 | 26873.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
