Pseudoalteromonas rubra strain SCSIO 6842

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain SCSIO 6842 is a marine bacterium primarily associated with the marine sponge Mycale grandis. This bacterium exhibits a rod-shaped morphology, which is characteristic of many members of the Pseudoalteromonas genus. The genetic architecture of P. rubra strain SCSIO 6842 is notable for its possession of three replicons. This feature may contribute to its adaptability and survival in the complex marine environment where it resides. The strain is cataloged under several accessions, specifically NZ_CP013611.1, NZ_CP013612.1, and NZ_CP013613.1, which likely relate to its genomic sequences, providing valuable data for further research. The association of P. rubra with marine sponges suggests potential ecological roles in nutrient cycling and the maintenance of sponge health. Marine sponges are known to host diverse microbial communities, and bacteria like P. rubra may play critical roles in processes such as the degradation of organic matter and the provision of essential nutrients to their sponge hosts. This relationship underscores the importance of microbial symbionts in marine ecosystems, where they contribute to the overall health and functionality of their hosts. Understanding the traits and behaviors of P. rubra can enhance our comprehension of microbial ecology in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain SCSIO 6842

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain SCSIO 6842


Gene Summary

Adenine Count

16468 bp

Thymine Count

16345 bp

Guanine Count

18306 bp

Cytosine Count

18749 bp

Genome Length

69868 bp

Protein-coding Genes

60 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative protease proteinAT705_RS02695Not AvailablePositive608465 - 60961641949.3
hypothetical proteinAT705_RS02700Not AvailablePositive609609 - 60999513269.8
Capsid proteinAT705_RS02705Not AvailablePositive610005 - 61094034153.7
phage protein gp36 family proteinAT705_RS02710Not AvailablePositive610983 - 61145316889.8
hypothetical proteinAT705_RS02715Not AvailablePositive611477 - 61181212150.6
Virion morphogenesis proteinAT705_RS02720Not AvailablePositive611816 - 61225915942.7
hypothetical proteinAT705_RS02725Not AvailablePositive612271 - 61270816400.7
hypothetical proteinAT705_RS25150Not AvailablePositive612705 - 6128695797.03
Hypothetical proteinAT705_RS02730Not AvailablePositive612866 - 61376232186.9
hypothetical proteinAT705_RS02735Not AvailablePositive613768 - 61409111774.2

Displaying genes 1 – 10 of 4992 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.