Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Pseudoalteromonadaceae
Genus
Pseudoalteromonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Pseudoalteromonadaceae |
| Genus | Pseudoalteromonas |
| Species | Pseudoalteromonas rubra |
| Strain | strain SCSIO 6842 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Marine; marine sponge |
| Biotic relationship | Not Available |
| Host(s) | Mycale grandis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1186942 bp
Thymine Count
1177319 bp
Guanine Count
1087505 bp
Cytosine Count
1081123 bp
Genome Length
4532889 bp
Protein-coding Genes
3763 genes
Non-Coding Genes
183 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | Positive | 388438 - 389970 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 390047 - 390123 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 390239 - 390314 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 390721 - 393600 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 393719 - 393833 | Not Available |
| glycosyl hydrolase family 18 protein | AT705_RS01750 | P29030 | Positive | 394762 - 396174 | 50969.7 |
| metal-dependent hydrolase | AT705_RS01755 | Not Available | Negative | 396230 - 396982 | 27053.8 |
| duf1800 family protein | AT705_RS01760 | Not Available | Positive | 397350 - 399404 | 75197.5 |
| duf1501 domain-containing protein | AT705_RS01765 | Not Available | Positive | 399417 - 400760 | 48239.8 |
| sigma-54-dependent fis family transcriptional regulator | AT705_RS01770 | P71229 | Positive | 400825 - 402261 | 53775.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
