Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Pseudoalteromonadaceae
Genus
Pseudoalteromonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Pseudoalteromonadaceae |
| Genus | Pseudoalteromonas |
| Species | Pseudoalteromonas rubra |
| Strain | strain SCSIO 6842 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Marine; marine sponge |
| Biotic relationship | Not Available |
| Host(s) | Mycale grandis |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudoalteromonas rubra strain SCSIO 6842 chromosome 1, complete
Gene Summary
Adenine Count
1186942 bp
Thymine Count
1177319 bp
Guanine Count
1087505 bp
Cytosine Count
1081123 bp
Genome Length
4532889 bp
Protein-coding Genes
3763 genes
Non-Coding Genes
183 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein gspm | AT705_RS13750 | Not Available | Positive | 3158531 - 3159007 | 17672.5 |
| type ii secretion system protein n | AT705_RS13755 | Not Available | Positive | 3159010 - 3159768 | 27059.5 |
| upf0149 family protein | AT705_RS13760 | Not Available | Positive | 3159772 - 3160347 | 21516.1 |
| hypothetical protein | AT705_RS13765 | Not Available | Negative | 3160353 - 3160556 | 7299.93 |
| hypothetical protein | AT705_RS13770 | Not Available | Negative | 3160556 - 3160912 | 13344.4 |
| cytochrome c oxidase accessory protein ccog | AT705_RS13775 | P54932 | Positive | 3161146 - 3162573 | 54111.1 |
| serine/threonine protein kinase | AT705_RS13780 | P0C0K4 | Positive | 3162690 - 3163664 | 37702.8 |
| thiol:disulfide interchange protein dsba/dsbl | AT705_RS13785 | P52234 | Positive | 3163684 - 3164307 | 22779.6 |
| thiol:disulfide interchange protein dsba/dsbl | AT705_RS13790 | Q02DM0 | Positive | 3164320 - 3164955 | 23487.5 |
| trna (uridine(54)-c5)-methyltransferase trma | AT705_RS13795 | Q3ILM2 | Negative | 3165015 - 3166112 | 42409.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
