Pseudoalteromonas rubra strain SCSIO 6842

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain SCSIO 6842 is a marine bacterium primarily associated with the marine sponge Mycale grandis. This bacterium exhibits a rod-shaped morphology, which is characteristic of many members of the Pseudoalteromonas genus. The genetic architecture of P. rubra strain SCSIO 6842 is notable for its possession of three replicons. This feature may contribute to its adaptability and survival in the complex marine environment where it resides. The strain is cataloged under several accessions, specifically NZ_CP013611.1, NZ_CP013612.1, and NZ_CP013613.1, which likely relate to its genomic sequences, providing valuable data for further research. The association of P. rubra with marine sponges suggests potential ecological roles in nutrient cycling and the maintenance of sponge health. Marine sponges are known to host diverse microbial communities, and bacteria like P. rubra may play critical roles in processes such as the degradation of organic matter and the provision of essential nutrients to their sponge hosts. This relationship underscores the importance of microbial symbionts in marine ecosystems, where they contribute to the overall health and functionality of their hosts. Understanding the traits and behaviors of P. rubra can enhance our comprehension of microbial ecology in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain SCSIO 6842

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain SCSIO 6842 chromosome 1, complete

Gene Summary

Adenine Count

1186942 bp

Thymine Count

1177319 bp

Guanine Count

1087505 bp

Cytosine Count

1081123 bp

Genome Length

4532889 bp

Protein-coding Genes

3763 genes

Non-Coding Genes

183 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s ribosomal rnaNot AvailableNot AvailablePositive2502534 - 2505413Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive2505683 - 2507215Not Available
hypothetical proteinAT705_RS10980Not AvailablePositive2507799 - 250812211366.1
hypothetical proteinAT705_RS25235Not AvailablePositive2508240 - 25084016192.28
50s ribosomal protein l17AT705_RS10985Q3IJI7Negative2508503 - 250890415007.2
dna-directed rna polymerase subunit alphaAT705_RS10990Q3IJI6Negative2508944 - 250993036175.2
30s ribosomal protein s4AT705_RS10995Q3IJJ5Negative2509955 - 251057523532.6
30s ribosomal protein s11AT705_RS11000Q3IJK7Negative2510598 - 251098413676.5
30s ribosomal protein s13AT705_RS11005Q3IJK6Negative2510998 - 251135413155.2
50s ribosomal protein l36AT705_RS24900A7MWH9Negative2511484 - 25115974235.47

Displaying genes 2241 – 2250 of 4992 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

206 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 206 metabolites

Health Effects

No health effects information available for this bacterium.