Pseudoalteromonas rubra strain SCSIO 6842

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas rubra strain SCSIO 6842 is a marine bacterium primarily associated with the marine sponge Mycale grandis. This bacterium exhibits a rod-shaped morphology, which is characteristic of many members of the Pseudoalteromonas genus. The genetic architecture of P. rubra strain SCSIO 6842 is notable for its possession of three replicons. This feature may contribute to its adaptability and survival in the complex marine environment where it resides. The strain is cataloged under several accessions, specifically NZ_CP013611.1, NZ_CP013612.1, and NZ_CP013613.1, which likely relate to its genomic sequences, providing valuable data for further research. The association of P. rubra with marine sponges suggests potential ecological roles in nutrient cycling and the maintenance of sponge health. Marine sponges are known to host diverse microbial communities, and bacteria like P. rubra may play critical roles in processes such as the degradation of organic matter and the provision of essential nutrients to their sponge hosts. This relationship underscores the importance of microbial symbionts in marine ecosystems, where they contribute to the overall health and functionality of their hosts. Understanding the traits and behaviors of P. rubra can enhance our comprehension of microbial ecology in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas rubra
Strainstrain SCSIO 6842

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine; marine sponge
Biotic relationshipNot Available
Host(s)Mycale grandis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas rubra strain SCSIO 6842 chromosome 1, complete

Gene Summary

Adenine Count

1186942 bp

Thymine Count

1177319 bp

Guanine Count

1087505 bp

Cytosine Count

1081123 bp

Genome Length

4532889 bp

Protein-coding Genes

3763 genes

Non-Coding Genes

183 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ornithine cyclodeaminase family proteinAT705_RS05440Q485R8Negative1224217 - 122515533738.4
xaa-pro peptidase family proteinAT705_RS05445P54518Negative1225166 - 122624239765.1
proline racemase family proteinAT705_RS05450Q485S0Negative1226239 - 122726737690.1
tonb-dependent receptor domain-containing proteinAT705_RS05455P38370Negative1227325 - 1230330110616.0
hypothetical proteinAT705_RS25180Not AvailableNegative1230845 - 12309915071.13
duf885 family proteinAT705_RS05460Not AvailableNegative1231128 - 123299068797.7
endolytic transglycosylase mltgAT705_RS05465P44720Negative1233107 - 123411738057.8
aminodeoxychorismate lyaseAT705_RS05470Q56693Negative1234117 - 123488428086.7
beta-ketoacyl-acp synthase iiAT705_RS05475P0AAI7Negative1234999 - 123623743215.3
acyl carrier proteinAT705_RS05480Q15TZ9Negative1236322 - 12365588685.04

Displaying genes 1131 – 1140 of 4992 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

206 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 206 metabolites

Health Effects

No health effects information available for this bacterium.