Burkholderia pyrrocinia strain DSM 10685

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia pyrrocinia strain DSM 10685 is a notable bacterium primarily found in petrol-contaminated soil. This environmental niche indicates its potential role in bioremediation processes, as certain Burkholderia species are known for their ability to degrade various organic pollutants, including hydrocarbons found in petroleum. The strain has a complex genetic structure, characterized by the presence of four replicons. This feature may contribute to its adaptability and metabolic diversity, enabling the bacterium to thrive in challenging conditions such as those presented by contaminated environments. Burkholderia pyrrocinia DSM 10685 has demonstrated the ability to interact with the plant Hordeum vulgare (barley), suggesting a potential for plant growth promotion or symbiotic relationships. Such interactions can be pivotal in enhancing the resilience of plants in contaminated soils, thereby facilitating phytoremediation efforts. The strain is cataloged with several accessions, including NZ_CP011503.1, NZ_CP011504.1, NZ_CP011505.1, and NZ_CP011506.1, which provide vital genetic information for further research and application in biotechnology. In summary, Burkholderia pyrrocinia strain DSM 10685 holds promise for ecological applications, particularly in the context of bioremediation of petroleum contaminants, while also potentially benefiting associated plant species like Hordeum vulgare. Its genetic complexity may play a key role in its environmental interactions and survival strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia pyrrocinia
Strainstrain DSM 10685

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatpetrol contaminated soil
Biotic relationshipNot Available
Host(s)Hordeum vulgare
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia pyrrocinia strain DSM 10685 chromosome 1, complete

Gene Summary

Adenine Count

596688 bp

Thymine Count

593996 bp

Guanine Count

1198737 bp

Cytosine Count

1194682 bp

Genome Length

3584103 bp

Protein-coding Genes

3250 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
single-stranded dna-binding proteinABD05_RS03920P59927Negative844847 - 84540118727.7
mfs transporterABD05_RS03925P77726Negative845504 - 84669141228.0
excinuclease abc subunit uvraABD05_RS03930Q9JZP1Positive846956 - 849841106529.0
ai-2e family transporterABD05_RS03935Not AvailablePositive850095 - 85118039875.3
formyltetrahydrofolate deformylaseABD05_RS03940Q46339Negative851312 - 85219633095.6
nudix hydrolase family proteinABD05_RS03945P0C026Negative852271 - 85313730998.0
lyse family translocatorABD05_RS03950A4WB82Negative853143 - 85375721620.1
adenine phosphoribosyltransferaseABD05_RS03955Q39CV8Negative853797 - 85436320362.8
monovalent cation:proton antiporter family proteinABD05_RS03960Q0ZAH7Negative854441 - 85644772485.9
arabinose 5-phosphate isomerase kdsdABD05_RS03965Q9HVW0Positive856574 - 85755734279.5

Displaying genes 791 – 800 of 7183 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

212 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 212 metabolites

Health Effects

No health effects information available for this bacterium.