Burkholderia pyrrocinia strain DSM 10685

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia pyrrocinia strain DSM 10685 is a notable bacterium primarily found in petrol-contaminated soil. This environmental niche indicates its potential role in bioremediation processes, as certain Burkholderia species are known for their ability to degrade various organic pollutants, including hydrocarbons found in petroleum. The strain has a complex genetic structure, characterized by the presence of four replicons. This feature may contribute to its adaptability and metabolic diversity, enabling the bacterium to thrive in challenging conditions such as those presented by contaminated environments. Burkholderia pyrrocinia DSM 10685 has demonstrated the ability to interact with the plant Hordeum vulgare (barley), suggesting a potential for plant growth promotion or symbiotic relationships. Such interactions can be pivotal in enhancing the resilience of plants in contaminated soils, thereby facilitating phytoremediation efforts. The strain is cataloged with several accessions, including NZ_CP011503.1, NZ_CP011504.1, NZ_CP011505.1, and NZ_CP011506.1, which provide vital genetic information for further research and application in biotechnology. In summary, Burkholderia pyrrocinia strain DSM 10685 holds promise for ecological applications, particularly in the context of bioremediation of petroleum contaminants, while also potentially benefiting associated plant species like Hordeum vulgare. Its genetic complexity may play a key role in its environmental interactions and survival strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia pyrrocinia
Strainstrain DSM 10685

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatpetrol contaminated soil
Biotic relationshipNot Available
Host(s)Hordeum vulgare
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia pyrrocinia strain DSM 10685 chromosome 3, complete

Gene Summary

Adenine Count

179445 bp

Thymine Count

180600 bp

Guanine Count

346644 bp

Cytosine Count

342316 bp

Genome Length

1049005 bp

Protein-coding Genes

917 genes

Non-Coding Genes

6 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arsenate reductaseABD05_RS00005Q39F41Positive19 - 248490129.8
arsenate reductaseABD05_RS38795Not AvailablePositive2469 - 445374343.9
peptide deformylaseABD05_RS00020Not AvailableNegative4560 - 509319843.9
nad-dependent dna ligase ligaABD05_RS00025Not AvailableNegative5090 - 716575247.5
cell division protein zipa c-terminal ftsz-binding domain-containing proteinABD05_RS00030Not AvailableNegative7332 - 859745184.9
chromosome segregation protein smcABD05_RS00035Not AvailableNegative8683 - 12195129379.0
dmt family transporterABD05_RS00040Not AvailableNegative12335 - 1327632719.8
succinyldiaminopimelate transaminaseABD05_RS00045Q3S8P9Positive13436 - 1466844655.0
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseABD05_RS00050Not AvailablePositive14713 - 1554029539.3
arsc family reductaseABD05_RS00055Not AvailablePositive15540 - 1590813376.3

Displaying genes 1 – 10 of 7183 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

96 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 96 metabolites

Health Effects

No health effects information available for this bacterium.