Citrobacter amalonaticus Y19

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus Y19 is a Gram-negative, facultative anaerobic bacterium characterized by its rod shape and the presence of flagella, which contribute to its motility. This species is notable for having two replicons, indicating a complex genomic structure that may facilitate adaptability in various environments. The accession numbers associated with Citrobacter amalonaticus Y19 are NZ_CP011132.1 and NZ_CP011133.1, which provide a means for researchers to access its genomic data for further study. The facultative anaerobic nature of this bacterium allows it to thrive in both aerobic and anaerobic conditions, suggesting its versatility in utilizing different metabolic pathways depending on the availability of oxygen. Biologically, the presence of flagella not only enables movement but may also play a role in the bacterium's ability to colonize diverse niches. This trait is particularly significant in ecological contexts, as it may enhance the organism's ability to compete for resources and adapt to varying environmental stresses. Understanding the characteristics of Citrobacter amalonaticus Y19 can provide insights into its ecological roles, potential applications in biotechnology, and its interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
StrainY19

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus Y19
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

74659 bp

Thymine Count

77423 bp

Guanine Count

69211 bp

Cytosine Count

69700 bp

Genome Length

290993 bp

Protein-coding Genes

333 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ygiq family radical sam proteinF384_RS25160Q8ZM03Positive5388410 - 539058182043.8
carboxypeptidase-like regulatory domain-containing proteinF384_RS25165Not AvailablePositive5390647 - 539110816603.6
2,5-didehydrogluconate reductase dkgaF384_RS25170Q46857Negative5391156 - 539198330861.0
alcohol dehydrogenaseF384_RS25175Q46856Negative5392088 - 539325141900.0
arac family transcriptional regulatorF384_RS25180Q46855Positive5393445 - 539434433859.2
deda family general envelope maintenance protein yghbF384_RS25185P0AA62Negative5394393 - 539505224110.3
cystathionine beta-lyaseF384_RS25190P06721Negative5395192 - 539637942984.5
tol-pal system-associated acyl-coa thioesteraseF384_RS25195P0ABU8Positive5396629 - 539736326158.9
tonb system transport protein exbdF384_RS25200P0ABV4Positive5397370 - 539779515560.0
hypothetical proteinF384_RS25205Not AvailableNegative5397860 - 539829116346.7

Displaying genes 5461 – 5470 of 5653 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

337 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 337 metabolites

Health Effects

No health effects information available for this bacterium.