Citrobacter amalonaticus Y19

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus Y19 is a Gram-negative, facultative anaerobic bacterium characterized by its rod shape and the presence of flagella, which contribute to its motility. This species is notable for having two replicons, indicating a complex genomic structure that may facilitate adaptability in various environments. The accession numbers associated with Citrobacter amalonaticus Y19 are NZ_CP011132.1 and NZ_CP011133.1, which provide a means for researchers to access its genomic data for further study. The facultative anaerobic nature of this bacterium allows it to thrive in both aerobic and anaerobic conditions, suggesting its versatility in utilizing different metabolic pathways depending on the availability of oxygen. Biologically, the presence of flagella not only enables movement but may also play a role in the bacterium's ability to colonize diverse niches. This trait is particularly significant in ecological contexts, as it may enhance the organism's ability to compete for resources and adapt to varying environmental stresses. Understanding the characteristics of Citrobacter amalonaticus Y19 can provide insights into its ecological roles, potential applications in biotechnology, and its interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
StrainY19

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus Y19
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

74659 bp

Thymine Count

77423 bp

Guanine Count

69211 bp

Cytosine Count

69700 bp

Genome Length

290993 bp

Protein-coding Genes

333 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf808 family proteinF384_RS09540P46125Negative2101348 - 210226532249.7
drug/metabolite exporter yedaF384_RS09545P0AA72Positive2102437 - 210335732267.8
very short patch repair endonucleaseF384_RS09550P09184Negative2103349 - 210381617921.5
dna cytosine methyltransferaseF384_RS09555P0AEE0Negative2103797 - 210523053921.2
phosphohydrolaseF384_RS09560P46144Negative2105281 - 210597926009.9
cell division protein drpbF384_RS09565P76334Negative2106032 - 21063019913.36
porin ompcF384_RS09570Q56110Positive2106946 - 210813343171.3
autotransporter outer membrane beta-barrel domain-containing proteinF384_RS09575P76017Positive2108725 - 211156898033.6
dini family proteinF384_RS09580P0A1G4Positive2111576 - 21118158920.72
is3-like element issen4 family transposaseF384_RS09590Not AvailablePositive2112193 - 211331343078.9

Displaying genes 2471 – 2480 of 5653 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

337 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 337 metabolites

Health Effects

No health effects information available for this bacterium.