Dehalococcoides mccartyi strain 11a5

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalococcoides

Description

Dehalococcoides mccartyi strain 11a5 is a notable anaerobic, Gram-positive bacterium characterized as a cocci shape and free-living biotic organism. It is a chemolithotroph, utilizing inorganic compounds as its energy source. The strain has a mesophilic temperature range, with an optimal growth temperature of 35°C. In terms of cellular structure, D. mccartyi strain 11a5 is unique in its arrangement, existing as single cells. It possesses a single membrane and contains two replicons, which may play a role in its genomic stability and functionality. Notably, the strain lacks mobility, as indicated by the absence of flagella. The ecological significance of D. mccartyi strain 11a5 lies in its ability to thrive in multiple habitats while contributing to bioremediation processes. Its anaerobic nature allows it to survive in environments where oxygen is limited, making it a key player in the degradation of halogenated compounds. This microbial activity is important for the detoxification of contaminated sites, particularly in anaerobic conditions, showcasing the role of D. mccartyi in environmental microbiology and bioremediation strategies. The strain is cataloged under the accession numbers NZ_CP011128.1 and NZ_CP011127.1, which provide a basis for further research into its genetic and functional characteristics.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalococcoides
SpeciesDehalococcoides mccartyi
Strainstrain 11a5

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Dehalococcoides mccartyi strain 11a5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemolithotroph
PathogenicityNot Available

Genome Summary

Dehalococcoides mccartyi strain 11a5 chromosome, complete genome.

Gene Summary

Adenine Count

388417 bp

Thymine Count

387270 bp

Guanine Count

343683 bp

Cytosine Count

342603 bp

Genome Length

1461973 bp

Protein-coding Genes

1504 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
radical sam proteinDm11a5_RS01255Not AvailablePositive238177 - 23892627878.6
b12-binding domain-containing radical sam proteinDm11a5_RS01260Not AvailablePositive238949 - 24043356710.4
pas domain-containing sensor histidine kinaseDm11a5_RS01265Not AvailablePositive240560 - 24175645386.8
response regulator transcription factorDm11a5_RS01270Not AvailablePositive241737 - 24242025768.7
diphthine--ammonia ligaseDm11a5_RS01275Not AvailablePositive242732 - 24359832278.6
reductive dehalogenaseDm11a5_RS01280Not AvailablePositive243709 - 24525657489.1
hypothetical proteinDm11a5_RS01285Not AvailablePositive245296 - 24559211245.3
adenosylcobinamide amidohydrolaseDm11a5_RS01290Not AvailablePositive245680 - 24644727997.3
helix-turn-helix domain-containing proteinDm11a5_RS01295Not AvailableNegative246587 - 2468058162.88
hypothetical proteinDm11a5_RS01300Not AvailablePositive246894 - 24748422356.4

Displaying genes 271 – 280 of 1580 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

40 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001795pentanoateC5H9O2Chemical structure of pentanoateNot available
Average101.126Da
Monoisotopic101.0608031Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da

Displaying 1–10 of 40 metabolites

Health Effects

No health effects information available for this bacterium.