Dehalococcoides mccartyi str. MB

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalococcoides

Description

Dehalococcoides mccartyi strain MB is a Gram-positive, coccoid bacterium that typically exists as single cells. This microbe thrives optimally at a temperature of 35.0°C and is classified as an anaerobe, indicating that it does not require oxygen for growth and may even be inhibited by its presence. D. mccartyi str. MB is a chemolithotroph, deriving its energy from inorganic compounds, which places it in a unique position within microbial communities, particularly in environments rich in halogenated compounds. This strain is known to inhabit various anaerobic environments, suggesting its versatility and potential adaptability to different ecological niches. Its ability to utilize inorganic substrates for energy may play a crucial role in biogeochemical cycling, particularly in environments contaminated with halogenated organic pollutants, where it may contribute to bioremediation processes. The metabolic capabilities of D. mccartyi str. MB render it a significant organism for studies focused on the degradation of environmental contaminants, thereby highlighting its potential utility in environmental microbiology and biotechnology.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalococcoides
SpeciesDehalococcoides mccartyi
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Dehalococcoides mccartyi str. MB
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemolithotroph
PathogenicityNot Available

Genome Summary

Dehalococcoides mccartyi str. MB

Accession NumberJGYD00000000.1

Gene Summary

Adenine Count

406257 bp

Thymine Count

406979 bp

Guanine Count

380364 bp

Cytosine Count

377915 bp

Genome Length

1571515 bp

Protein-coding Genes

1620 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dehalogenaseDA01_00010Not Available+228 - 50010125.6
marr family transcriptional regulatorDA01_00015Not Available+711 - 114515883.3
multidrug mfs transporterDA01_00020O32182+1161 - 282259031.8
radical sam proteinDA01_00025Not Available+2953 - 508579855.1
marr family transcriptional regulatorDA01_00030Not Available-5126 - 565020193.5
dehalogenaseDA01_00035Not Available+5969 - 739652725.4
dehalogenaseDA01_00040Not Available+7418 - 76909987.85
marr family transcriptional regulatorDA01_00045O31564+7870 - 831916197.9
membrane proteinDA01_00050O31501+8342 - 11356105139.0
hypothetical proteinDA01_00055Q8R682-11457 - 1320865921.6

Displaying genes 1 – 10 of 1674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

104 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001603(Z)-1,2-dichloroetheneC2H2Cl2Chemical structure of (Z)-1,2-dichloroetheneNot available
Average96.943Da
Monoisotopic95.953355478Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da

Displaying 1–10 of 104 metabolites