Pseudomonas chlororaphis strain UFB2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain UFB2 is a Gram-negative, rod-shaped bacterium primarily found in the nodules of Chamaecytisus albus, as well as in the rhizosphere and root nodules of various plants. This strain exhibits a single replicon and has been associated with hosts from the Viridiplantae kingdom, including Brassica napus var. napus. Notably, Pseudomonas chlororaphis strain UFB2 has been documented to possess pathogenicity towards animals, indicating a potential for interactions beyond its primary plant hosts. This characteristic suggests that the bacterium may play complex roles in its ecosystem, possibly influencing plant health or contributing to the dynamics of plant-animal interactions. The presence of Pseudomonas chlororaphis in diverse habitats, particularly in association with root nodules, highlights its ecological significance in soil microbiomes. Its interactions with plant hosts like Chamaecytisus albus and Brassica napus var. napus can be critical for nutrient cycling and plant health. Furthermore, the strain’s potential pathogenicity emphasizes the need for further research to understand its ecological roles, particularly how it may impact both plant and animal health within its native environment. In summary, Pseudomonas chlororaphis strain UFB2 exemplifies the intricate relationships that bacteria can have with both plant and animal hosts, making it an important subject for studies on microbial ecology and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain UFB2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain UFB2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain UFB2


Gene Summary

Adenine Count

1226359 bp

Thymine Count

1188330 bp

Guanine Count

1928553 bp

Cytosine Count

2017005 bp

Genome Length

6360256 bp

Protein-coding Genes

5533 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
quorum-sensing-regulated virulence factor family proteinVM99_RS13505Not AvailablePositive3051785 - 305220715474.7
hypothetical proteinVM99_RS13510Not AvailableNegative3052235 - 30524327701.2
Hypothetical proteinVM99_RS13515Not AvailablePositive3052684 - 305380242780.3
recombination regulator recxVM99_RS13520C3KDG1Negative3053847 - 305431418021.6
Dna strand exchange and recombination protein with protease and nuclease activityVM99_RS13525Q3KH38Negative3054323 - 305537537191.9
cina family proteinVM99_RS13530P72227Negative3055459 - 305595917528.7
lysis system i-spanin subunit rzVM99_RS13535Not AvailableNegative3056031 - 305656719220.2
Glycoside hydrolase family 19 proteinVM99_RS13540P44187Negative3056549 - 305711220667.5
Tail proteinVM99_RS13545Not AvailableNegative3057134 - 305756816285.9
gp53-like domain-containing proteinVM99_RS29920Not AvailableNegative3057582 - 305811818346.7

Displaying genes 1 – 10 of 5636 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

389 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 389 metabolites

Health Effects

No health effects information available for this bacterium.