Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas chlororaphis |
| Strain | strain UFB2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | nodules of Chamaecytisus albus; rhizosphere; root nodules |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Brassica napus var. napus, Persea americana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Animal |
Gene Summary
Adenine Count
1226359 bp
Thymine Count
1188330 bp
Guanine Count
1928553 bp
Cytosine Count
2017005 bp
Genome Length
6360256 bp
Protein-coding Genes
5533 genes
Non-Coding Genes
103 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VM99_RS01990 | Not Available | Negative | 486106 - 486552 | 16046.4 |
| type vi secretion system amidase effector protein tae4 | VM99_RS01995 | Not Available | Negative | 486549 - 486986 | 16476.5 |
| type vi secretion system tube protein hcp | VM99_RS02000 | Q9I747 | Negative | 487068 - 487556 | 17540.0 |
| type vi secretion system contractile sheath large subunit | VM99_RS02005 | Not Available | Negative | 487765 - 489261 | 55657.5 |
| type vi secretion system contractile sheath small subunit | VM99_RS02010 | Q9I749 | Negative | 489264 - 489770 | 18488.3 |
| Tmrna,resume consensus sequence (at 177): tccaggcgcggatgcagg | Not Available | Not Available | Positive | 490378 - 490819 | Not Available |
| type vi secretion system protein tssa | VM99_RS02015 | Q9I750 | Negative | 489851 - 490888 | 37035.4 |
| type vi secretion system-associated fha domain protein tagh | VM99_RS02020 | Not Available | Positive | 491306 - 492784 | 53703.1 |
| type vi secretion system lipoprotein tssj | VM99_RS02025 | Not Available | Positive | 492853 - 493359 | 18234.8 |
| type vi secretion system baseplate subunit tssk | VM99_RS02030 | Not Available | Positive | 493375 - 494709 | 48439.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.









