Pseudomonas chlororaphis strain UFB2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis strain UFB2 is a Gram-negative, rod-shaped bacterium primarily found in the nodules of Chamaecytisus albus, as well as in the rhizosphere and root nodules of various plants. This strain exhibits traits characteristic of the Pseudomonas genus, which are notable for their metabolic versatility and adaptability to diverse environments. The presence of Pseudomonas chlororaphis strain UFB2 in the root nodules of Chamaecytisus albus suggests a potential role in symbiotic relationships within its habitat. The specific association with root nodules indicates that this microbe may contribute to plant health, possibly through mechanisms such as nutrient acquisition or facilitation of plant growth. Additionally, as a member of the rhizosphere microbiome, Pseudomonas chlororaphis strain UFB2 may play a significant role in soil health and nutrient cycling, influencing the availability of essential elements to plants and potentially enhancing soil structure. Understanding the interactions between this strain and its plant hosts could provide insights into the ecological dynamics of root-associated microbial communities and their impact on plant development.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainstrain UFB2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis strain UFB2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain UFB2


Gene Summary

Adenine Count

1226359 bp

Thymine Count

1188330 bp

Guanine Count

1928553 bp

Cytosine Count

2017005 bp

Genome Length

6360256 bp

Protein-coding Genes

5533 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
quorum-sensing-regulated virulence factor family proteinVM99_RS13505Not Available+3051785 - 305220715474.7
hypothetical proteinVM99_RS13510Not Available-3052235 - 30524327701.2
Hypothetical proteinVM99_RS13515Not Available+3052684 - 305380242780.3
recombination regulator recxVM99_RS13520C3KDG1-3053847 - 305431418021.6
Dna strand exchange and recombination protein with protease and nuclease activityVM99_RS13525Q3KH38-3054323 - 305537537191.9
cina family proteinVM99_RS13530P72227-3055459 - 305595917528.7
lysis system i-spanin subunit rzVM99_RS13535Not Available-3056031 - 305656719220.2
Glycoside hydrolase family 19 proteinVM99_RS13540P44187-3056549 - 305711220667.5
Tail proteinVM99_RS13545Not Available-3057134 - 305756816285.9
gp53-like domain-containing proteinVM99_RS29920Not Available-3057582 - 305811818346.7

Displaying genes 1 – 10 of 5636 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

389 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 389 metabolites