Phaeobacter piscinae strain P36

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Phaeobacter

Description

Phaeobacter piscinae strain P36 is a Gram-negative, rod-shaped bacterium primarily isolated from a turbot rearing facility. This strain is notable for its genetic complexity, possessing four replicons, which may contribute to its adaptability and functionality in aquatic environments. The presence of multiple replicons can facilitate various metabolic processes and enhance genetic diversity, potentially allowing P. piscinae to thrive in the dynamic conditions of fish rearing facilities. The habitat of P. piscinae indicates its ecological niche, where it likely plays a role in the microbiome associated with turbot aquaculture. Bacteria in such environments can influence water quality, nutrient cycling, and the health of aquatic organisms. The ability of P. piscinae to inhabit this specific environment suggests it may possess traits that allow it to interact positively with fish and other microorganisms, possibly through mechanisms such as biofilm formation, nutrient assimilation, or antimicrobial activity. The genomic accessions associated with P. piscinae strain P36—NZ_CP010643.1, NZ_CP010646.1, NZ_CP010647.1, and NZ_CP010648.1—provide a basis for further research into its genetic capabilities and ecological functions. Understanding the role of Phaeobacter piscinae in aquaculture could lead to improved practices in fish farming, enhancing both productivity and sustainability in the industry.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPhaeobacter
SpeciesPhaeobacter piscinae
Strainstrain P36

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatturbot rearing facility
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phaeobacter piscinae strain P36 plasmid pP36_e, complete sequence.

Gene Summary

Adenine Count

12655 bp

Thymine Count

12672 bp

Guanine Count

22354 bp

Cytosine Count

21468 bp

Genome Length

69149 bp

Protein-coding Genes

50 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorPhaeoP36_RS00845Not AvailableNegative198960 - 19962524481.3
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenasePhaeoP36_RS00850Not AvailableNegative199803 - 20091839434.5
heavy metal translocating p-type atpasePhaeoP36_RS00855Not AvailablePositive201249 - 20376586415.3
cu(i)-responsive transcriptional regulatorPhaeoP36_RS00860Not AvailablePositive203762 - 20416314857.7
3-keto-5-aminohexanoate cleavage proteinPhaeoP36_RS00865Not AvailableNegative204456 - 20529230332.1
protocatechuate 3,4-dioxygenase subunit alphaPhaeoP36_RS00870Not AvailableNegative205304 - 20594823600.8
protocatechuate 3,4-dioxygenase subunit betaPhaeoP36_RS00875Not AvailableNegative205948 - 20667327057.1
4-carboxymuconolactone decarboxylasePhaeoP36_RS00880Not AvailableNegative206660 - 20708515251.9
pca operon transcription factor pcaqPhaeoP36_RS00885Not AvailablePositive207172 - 20808933180.4
branched-chain amino acid abc transporter permeasePhaeoP36_RS00890Not AvailablePositive208327 - 20920230537.3

Displaying genes 351 – 360 of 3635 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.