Methanosarcina barkeri MS

Cocci

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina barkeri MS is a cocci-shaped archaeon known for its significance in anaerobic environments, particularly in the context of methane production. This organism possesses flagella, which facilitates movement within its habitat. Methanosarcina barkeri MS has a unique genomic structure characterized by the presence of two replicons, indicating a complex genetic organization that may contribute to its metabolic versatility. The specific genomic accessions associated with Methanosarcina barkeri MS include NZ_CP009527.1 and NZ_CP009528.1, which provide insights into its genetic makeup and potential functional capabilities. These replicons may harbor genes essential for the organism's survival and adaptation to various environmental conditions, particularly in the degradation of organic matter and the production of biogas. From a biological and ecological perspective, Methanosarcina barkeri MS plays a critical role in biogeochemical cycles, particularly in the carbon cycle, by converting substrates such as acetate and methanol into methane. This process is vital for the reduction of greenhouse gases in anaerobic ecosystems and contributes to the overall energy flow within these environments. The ability of Methanosarcina barkeri MS to thrive in such conditions underscores its importance in microbial communities, particularly in environments such as wetlands, landfills, and the digestive systems of certain animals, where methanogenesis is a key metabolic process.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina barkeri
StrainMS

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina barkeri MS


Gene Summary

Adenine Count

13303 bp

Thymine Count

13448 bp

Guanine Count

7574 bp

Cytosine Count

7373 bp

Genome Length

41698 bp

Protein-coding Genes

23 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pkd domain-containing proteinMSBRM_RS18600Not AvailablePositive583 - 4836151827.0
glycosyltransferaseMSBRM_RS00010Not AvailableNegative5385 - 651242147.9
hypothetical proteinMSBRM_RS00015Not AvailableNegative6455 - 765746758.1
non-hydrolyzing udp-n-acetylglucosamine 2-epimeraseMSBRM_RS00020Not AvailableNegative7679 - 879441299.5
duf354 domain-containing proteinMSBRM_RS00025Not AvailableNegative8791 - 990342459.4
transposaseMSBRM_RS00030Not AvailableNegative10026 - 1101838493.1
glycosyltransferase family 2 proteinMSBRM_RS00035Not AvailableNegative11072 - 1184827849.4
site-specific integraseMSBRM_RS00040Not AvailableNegative12407 - 1322832157.6
hypothetical proteinMSBRM_RS00045Not AvailablePositive14635 - 148989730.36
lipopolysaccharide biosynthesis proteinMSBRM_RS00050Not AvailablePositive15380 - 1693057113.9

Displaying genes 1 – 10 of 3846 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

80 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da

Displaying 1–10 of 80 metabolites

Health Effects

No health effects information available for this bacterium.