Methanosarcina barkeri MS

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina barkeri
StrainMS

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina barkeri MS

NZ_CP009527.1NZ_CP009528.1

Gene Summary

Adenine Count

13303 bp

Thymine Count

13448 bp

Guanine Count

7574 bp

Cytosine Count

7373 bp

Genome Length

41698 bp

Protein-coding Genes

23 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
pkd domain-containing proteinMSBRM_RS18600Not Available+583 - 4836151827.0
glycosyltransferaseMSBRM_RS00010Not Available-5385 - 651242147.9
hypothetical proteinMSBRM_RS00015Not Available-6455 - 765746758.1
non-hydrolyzing udp-n-acetylglucosamine 2-epimeraseMSBRM_RS00020Not Available-7679 - 879441299.5
duf354 domain-containing proteinMSBRM_RS00025Not Available-8791 - 990342459.4
transposaseMSBRM_RS00030Not Available-10026 - 1101838493.1
glycosyltransferase family 2 proteinMSBRM_RS00035Not Available-11072 - 1184827849.4
site-specific integraseMSBRM_RS00040Not Available-12407 - 1322832157.6
hypothetical proteinMSBRM_RS00045Not Available+14635 - 148989730.36
lipopolysaccharide biosynthesis proteinMSBRM_RS00050Not Available+15380 - 1693057113.9

Displaying genes 1 – 10 of 3846 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

80 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da

Displaying 1–10 of 80 metabolites