Sphingopyxis macrogoltabida strain 203

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis macrogoltabida strain 203 is a Gram-negative, rod-shaped bacterium predominantly found in soil environments. This species is characterized by its unique genetic architecture, possessing three replicons, which can contribute to its adaptability and genetic diversity. The presence of multiple replicons is often associated with increased resilience and the ability to thrive in various ecological niches. This strain is part of the Sphingopyxis genus, which includes bacteria capable of degrading complex organic compounds, underscoring its potential ecological role in bioremediation and nutrient cycling within soil ecosystems. The ability to metabolize various substrates can be advantageous for survival in diverse soil habitats, where organic matter decomposition is crucial for maintaining soil health and fertility. The genetic information for Sphingopyxis macrogoltabida strain 203 is documented with the following accessions: NZ_CP009431.1, NZ_CP009430.1, and NZ_CP009429.1. These accessions provide researchers with a valuable resource for further studies on the genetic and functional characteristics of this strain, potentially leading to insights into its ecological interactions and contributions to soil microbiomes. Overall, Sphingopyxis macrogoltabida strain 203 exemplifies the complexity and functionality of soil bacteria, highlighting their essential roles in ecological processes such as organic matter degradation and soil nutrient dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis macrogoltabida
Strainstrain 203

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis macrogoltabida strain 203


Gene Summary

Adenine Count

28184 bp

Thymine Count

30902 bp

Guanine Count

46095 bp

Cytosine Count

46059 bp

Genome Length

151240 bp

Protein-coding Genes

139 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aaa family atpaseLH19_RS26930Not AvailablePositive103 - 130244167.9
parb/repb/spo0j family partition proteinLH19_RS26935Not AvailablePositive1299 - 231537564.0
replication initiator protein aLH19_RS26940Not AvailablePositive2494 - 374747151.2
wgr domain-containing proteinLH19_RS28270Not AvailablePositive4758 - 503910861.0
marr family transcriptional regulatorLH19_RS26945Not AvailableNegative5045 - 584528720.4
site-specific integraseLH19_RS26950Not AvailablePositive6161 - 717136584.8
3'-5' exonucleaseLH19_RS26955Not AvailablePositive7527 - 842633670.7
atp-dependent endonucleaseLH19_RS26960Not AvailablePositive8458 - 1059378548.4
uvrd-helicase domain-containing proteinLH19_RS26965Not AvailablePositive10595 - 1239466832.2
rna-directed dna polymeraseLH19_RS26970Not AvailablePositive12619 - 1501288954.5

Displaying genes 1 – 10 of 526 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

103 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da

Displaying 1–10 of 103 metabolites

Health Effects

No health effects information available for this bacterium.