Rhodococcus opacus strain 1CP

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus strain 1CP is a Gram-positive, mesophilic bacterium characterized by its filamentous cell arrangement and cocci shape. As an aerobic organism, it requires oxygen for growth and does not exhibit mobility, lacking flagella despite their presence. This strain possesses three replicons and is surrounded by a single membrane. Rhodococcus species are known for their diverse metabolic capabilities, particularly in degrading organic compounds, which may suggest ecological roles in bioremediation. R. opacus strain 1CP’s free-living biotic relationship allows it to thrive in various environments, potentially contributing to soil health and nutrient cycling. The accessions for this strain are NZ_CP009113.1, NZ_CP009111.1, and NZ_CP009112.1, which provide valuable resources for genomic studies and further research into its metabolic pathways and applications. Understanding the traits of R. opacus strain 1CP can offer insights into its ecological importance, especially in environments impacted by pollutants, where its capacity to metabolize complex organic substances may aid in environmental recovery processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
Strainstrain 1CP

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus strain 1CP
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

801 genes

Non-Coding Genes

3 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh:flavin oxidoreductase/nadh oxidaseR1CP_RS23745Not AvailablePositive5215946 - 521704639096.2
mfs transporterR1CP_RS23750Not AvailablePositive5217290 - 521875951917.0
ribokinaseR1CP_RS23755Not AvailablePositive5218769 - 521963528287.4
recq family atp-dependent dna helicaseR1CP_RS23760Not AvailablePositive5219692 - 522179175401.8
diaminobutyrate acetyltransferaseR1CP_RS23765Not AvailablePositive5221943 - 522245518722.1
diaminobutyrate--2-oxoglutarate transaminaseR1CP_RS23770Not AvailablePositive5222483 - 522374545559.9
ectoine synthaseR1CP_RS23775Not AvailablePositive5223765 - 522416314883.5
d-isomer specific 2-hydroxyacid dehydrogenase family proteinR1CP_RS23780Not AvailablePositive5224174 - 522510932470.9
nad-dependent protein deacetylaseR1CP_RS23785Not AvailablePositive5225131 - 522595829455.3
glutamate 5-kinaseR1CP_RS23790Not AvailableNegative5225962 - 522706237624.9

Displaying genes 5661 – 5670 of 7995 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.