Rhodococcus opacus strain 1CP

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus strain 1CP is a Gram-positive, mesophilic bacterium characterized by its filamentous cell arrangement and cocci shape. As an aerobic organism, it requires oxygen for growth and does not exhibit mobility, lacking flagella despite their presence. This strain possesses three replicons and is surrounded by a single membrane. Rhodococcus species are known for their diverse metabolic capabilities, particularly in degrading organic compounds, which may suggest ecological roles in bioremediation. R. opacus strain 1CP’s free-living biotic relationship allows it to thrive in various environments, potentially contributing to soil health and nutrient cycling. The accessions for this strain are NZ_CP009113.1, NZ_CP009111.1, and NZ_CP009112.1, which provide valuable resources for genomic studies and further research into its metabolic pathways and applications. Understanding the traits of R. opacus strain 1CP can offer insights into its ecological importance, especially in environments impacted by pollutants, where its capacity to metabolize complex organic substances may aid in environmental recovery processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
Strainstrain 1CP

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus strain 1CP
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

801 genes

Non-Coding Genes

3 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix transcriptional regulatorR1CP_RS21345Not AvailableNegative4723655 - 472463535232.7
helix-turn-helix transcriptional regulatorR1CP_RS21350Not AvailableNegative4724632 - 472562435674.2
pup--protein ligaseR1CP_RS21355Not AvailableNegative4725672 - 472703051265.0
phosphatase pap2 family proteinR1CP_RS21360Not AvailablePositive4727104 - 472857051792.2
proteasome subunit alphaR1CP_RS21365Not AvailableNegative4728561 - 472934028287.5
proteasome subunit betaR1CP_RS21370Not AvailableNegative4729337 - 473022131037.2
ubiquitin-like protein pupR1CP_RS21375Not AvailableNegative4730218 - 47304126956.65
depupylase/deamidase dopR1CP_RS21380Not AvailableNegative4730583 - 473208254603.8
nitroreductase family deazaflavin-dependent oxidoreductaseR1CP_RS21385Not AvailableNegative4732157 - 473253413923.8
nudix domain-containing proteinR1CP_RS21390Not AvailablePositive4732617 - 473316519995.3

Displaying genes 5181 – 5190 of 7995 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.