Rhodococcus opacus strain R7

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus strain R7 is a gram-positive bacterium characterized by its filamentous cell arrangement and cocci shape. This organism is an aerobe, indicating that it requires oxygen for growth. It is non-motile and possesses flagella, which is somewhat atypical for its described mobility. R. opacus R7 thrives in mesophilic temperature ranges, suggesting optimal growth at moderate temperatures. The strain has a complex genomic structure, featuring a total of six replicons, which may contribute to its genetic diversity and adaptability in various environments. It has a single membrane, which is consistent with its classification within the genus Rhodococcus. Rhodococcus opacus R7 is free-living, indicating that it does not rely on other organisms for survival and can exist independently in its environment. This trait supports its potential ecological role in various ecosystems, particularly in soil or similar habitats where it can contribute to biogeochemical cycles. The genetic data for this strain can be accessed through several accession numbers, which include NZ_CP008947.1, NZ_CP008949.1, NZ_CP008952.1, NZ_CP008950.1, NZ_CP008948.1, and NZ_CP008951.1. In terms of ecological insight, the ability of R. opacus R7 to thrive independently and its aerobic nature suggest it may play a significant role in the degradation of organic pollutants in the environment, making it a potential candidate for bioremediation applications.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
Strainstrain R7

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus strain R7
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus opacus strain R7 plasmid pPDG5.

Gene Summary

Adenine Count

4653 bp

Thymine Count

4737 bp

Guanine Count

7854 bp

Cytosine Count

7931 bp

Genome Length

25175 bp

Protein-coding Genes

24 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hamp domain-containing proteinEP51_RS44645Not AvailableNegative218275 - 21920133012.8
hypothetical proteinEP51_RS44650Not AvailablePositive219574 - 22056634700.3
sulfite exporter taue/safe family proteinEP51_RS44655Not AvailablePositive220944 - 22171725991.9
sterol desaturase family proteinEP51_RS44660Not AvailableNegative221598 - 22266838591.3
helix-turn-helix domain-containing proteinEP51_RS48865Not AvailableNegative222716 - 22304511645.1
hypothetical proteinEP51_RS48870Not AvailableNegative223099 - 22347312471.7
cadmium resistance transporterEP51_RS44670Not AvailableNegative223470 - 22406320374.5
duf3703 domain-containing proteinEP51_RS44675Not AvailableNegative224098 - 22445413061.7
signal peptidase iiEP51_RS44680Not AvailableNegative224451 - 22494217187.8
cation-translocating p-type atpaseEP51_RS44685Not AvailableNegative224969 - 22692467016.4

Displaying genes 621 – 630 of 9254 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

58 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001767oxalateC2O4Chemical structure of oxalateNot available
Average88.019Da
Monoisotopic87.979658488Da
BASm0001772maleateC4H2O4Chemical structure of maleateNot available
Average114.057Da
Monoisotopic113.996405704Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 58 metabolites

Health Effects

No health effects information available for this bacterium.