Rhodococcus opacus PD630

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus PD630 is a Gram-positive, aerobic bacterium characterized by its cocci shape and filamentous cell arrangement. This organism exhibits a mesophilic temperature range, indicating optimal growth at moderate temperatures. It is non-motile, lacking flagella, which suggests a sedentary lifestyle in its habitat. Rhodococcus opacus PD630 is notable for its genetic complexity, possessing ten replicons, which may contribute to its adaptability and metabolic versatility. It features a single membrane structure, characteristic of many bacteria in its class. This organism is free-living, highlighting its independence from host organisms and its capability to thrive in diverse environments. The strain is recognized for its biotechnological potential, particularly in the degradation of organic pollutants and the production of valuable bioproducts, including biofuels. Its ability to utilize a variety of carbon sources makes it an important player in bioremediation efforts and in the broader context of environmental microbiology. In summary, Rhodococcus opacus PD630 represents a significant member of the microbial community with its unique traits that facilitate its survival and utility in various ecological niches. Its adaptability and metabolic capabilities underscore the importance of studying such organisms in understanding microbial roles in ecosystem dynamics and bioremediation processes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
StrainPD630

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus PD630
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

16413 bp

Thymine Count

18829 bp

Guanine Count

31208 bp

Cytosine Count

31138 bp

Genome Length

97588 bp

Protein-coding Genes

94 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yafy family proteinPD630_RS22860Not AvailableNegative5102914 - 510387934689.9
pup--protein ligasePD630_RS22865Not AvailableNegative5103954 - 510529750580.1
phosphatase pap2 family proteinPD630_RS22870Not AvailablePositive5105386 - 510685251790.2
proteasome subunit alphaPD630_RS22875Not AvailableNegative5106843 - 510762228323.5
proteasome subunit betaPD630_RS22880Not AvailableNegative5107619 - 510850331066.2
ubiquitin-like protein pupPD630_RS22885Not AvailableNegative5108500 - 51086946956.65
depupylase/deamidase dopPD630_RS22890Not AvailableNegative5108865 - 511036454603.8
nitroreductase family deazaflavin-dependent oxidoreductasePD630_RS22895Not AvailableNegative5110439 - 511081613824.6
nudix domain-containing proteinPD630_RS22900Not AvailablePositive5110899 - 511138417426.2
proteasome atpasePD630_RS22905Not AvailableNegative5111513 - 511328865837.9

Displaying genes 4781 – 4790 of 8400 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.